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Katherine S. Caldwell and Richard W. Michelmore. 2009. Arabidopsis thaliana Genes Encoding Defense Signaling and Recognition Proteins Exhibit Contrasting Evolutionary Dynamics. Genetics. 2009 February; 181(2): 671–684.

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B.A. Linquist, J.E. Hill, R.G. Mutters, C.A. Greer, C. Hartley, M.D. Ruark and C. Van Kessel. 2009. Assessing the necessity of surface applied pre-plant nitrogen fertilizer in rice systems. Agronomy Journal 101:906-915.

Miller, W.A., D.J. Lewis, M.D.G. Pereira, M. Lennox, P.A. Conrad, K.W. Tate, and E.R. Atwill. 2008. Farm factors associated with reducing Cryptosporidium loading in storm runoff from dairies. J. Environmental Quality. 37:1875-1882.

Goudeau, D.,  S.L. Uratsu, K. Inoue, F. Goes daSilva, A. Leslie, D. Cook, Reagan, R. and  A.M. Dandekar. 2008. Tuning the orchestra: Selective gene regulation and orange fruit quality. Plant Science 174:310–20.

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Saito, K., B. Linquist, D.E. Johnson, S. Phengchanh, T. Shiraiwa, T. Horie. 2008. Planted legume fallows reduce weeds and increase soil N and P contents but not upland rice yields. Agroforestry Systems 74:63-72.

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Chatelet, D.S., T.L. Rost, M. Matthews, and K.A. Shackel. 2008. The peripheral xylem of grapevine (Vitis vinifera). 2. Anatomy and development. J. ExpBot 59: 1997-2007.

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Olchin, G.P., S. Ogle, S.D. Frey, T.R. Filley, K. Paustian, and Six, J.W.. 2008. Residue Carbon Stabilization in Soil Aggregates of No-Till and Tillage Dryland Cropping Systems. Soil Sci. Soc. Am. J., 72:507-513.

De Graaff, M.A., C. Van Kessel, and Six, J.W.. 2008. The impact of long-term elevated CO2 on C and N retention in stable SOM pools. Plant Soil, 303:311-321.

Van Oost, K., Six, J.W., G. Govers, T. Quine, and S. De Gryze. 2008. Soil Erosion: A Carbon Sink or Source?. Science, 319:1040-1041.

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Lichter, K.,  B. Govaerts, Six, J.W., K.D. Sayre, J. Deckers, and L. Dendooven. 2008. Aggregation and C and N contents of soil organic matter fractions in a permanent raised-bed planting system in the Highlands of Central Mexico. Plant and Soil, 305:237-252.

Conant, R., R.A. Drijber, M.L. Haddix, W.J. Parton, E.A. Paul, A.F. Plante, Six, J.W., and J.M. Steinweg. 2008. Sensitivity of organic matter decomposition to warming varies with its quality. Global Change Biol., 14:868-877.

Gulde, S., H. Chung, W. Amelung, C. Chang, and Six, J.W.. 2008. Soil carbon saturation controls labile and stable carbon pool dynamics. Soil Sci. Soc. Am. J., 72:605-612.

Linquist, B.A., E. Byous, G. Jones, J.K. Williams, Six, J.W.,  W. Horwath, and C. Van Kessel. 2008. Nitrogen and Potassium Fertility Impacts on Aggregate Sheath Spot Disease and Yields of Rice. Plant Prod. Sci. 11:260-267.

Stewart, C.E., K. Paustian, R.T. Conant, A.F. Plante, and Six, J.W.. 2008. Soil carbon saturation: Evaluation and corroboration by long-term incubations. Soil Biol. Biochem. 40:1741-1750.

Chung, H., J.H. Grove, and Six, J.W.. 2008. Indications for Soil C Saturation in a Temperate Agroecosystem. Soil Sci. Soc. Am. J. 72:1132-1139.

R. Gentile, B. Vanlauwe, P. Chivenge, and Six, J.W.. 2008. Interactive effects from combining fertilizer and organic residue inputs on nitrogen transformations. Soil Biol. and Biochem. 40:2375-2384.

SELMA Maria V., FREITAS Paula M., ALMELA Luis, GONZALEZ-BARRIO Rocio, ESPIN Juan Carlos, Suslow Trevor, TOMAS-BARBERAN Francisco, GIL Maria I. 2008. Ultraviolet-C and Induced Stilbenes Control Ochratoxigenic Aspergillus in Grapes. Journal of agricultural and food chemistry, vol. 56, no21, pp. 9990-9996.

Hernández-Domínguez, C., Hernández-Anguiano, A.M., Cháidez-Quiroz, C. Rendón-Sánchez , G. and T.V. Suslow. 2008. Detection of Salmonella and fecal coliforms in preharvest and postharvest water applied to cantaloupes in Mexico. Agricultura Tecnica en Mexico. 34: 75-84.

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Knox, A.K, R.A. Dahlgren, K.W. Tate, and E.R. Atwill. 2008. Efficacy of Flow-Through Wetlands to Retain Nutrient, Sediment, and Microbial Pollutants. Environmental Quality. 37:1837-1846.

Vogel, J., and Hill, T.A.. 2008. High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3. Plant Cell Reports vol 27(3): 471-478.

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Kliebenstein, D.J. 2008. A role for gene duplication and natural variation of gene expression in the evolution of metabolism. PLoS ONE 3(3)e1838.

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Kliebenstein, D.J. and H.C. Rowe. 2008. Ecological costs of biotrophic versus necrotrophic pathogen resistance, the hypersensitive response and signal transduction. Plant Science 174(6)551-6.

H.C. Rowe, Hansen, B.G., Halkier, B.A. and D.J. Kliebenstein. 2008. Biochemical networks and epistasis shape the Arabidopsis metabolome. The Plant Cell 20(5)1199-1216.

Mitchell, J.P., Randal J. Southard, Nicholaus M. Madden, Karen M. Klonsky, Juliet B. Baker, Richard L. DeMoura, William R. Horwath, Daniel S. Munk, Jonathan F. Wroble, Kurt J. Hembree, and Wesley W. Wallender. 2008. Transition to conservation tillage evaluated in San Joaquin Valley cotton and tomato rotations. California Agriculture Volume 62, Number 2:74-79.

Mitchell, J.P., K.M. Klonsky, E.M. Miyao, K.J. Hembree. 2008. Conservation Tillage Tomato Production in California’s San Joaquin Valley. UC ANR communication Services.  Publication 8330.

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Madden, N.M., R.J. Southard, and Mitchell, J.P.. 2008. Conservation tillage reduced PM10 emissions in dairy forage rotations. Atmospheric Environment 42, 3795-3808.

Putnam, D.H., P. Robinson, and E. DePeters. 2008. Forage Quality and Testing. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8302. Oakland, CA.

Cangiano, C. A., A. R. Castillo, J. Guerrero, D. H. Putnam. 2008. Alfalfa Grazing Management. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8304. Oakland, CA.

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Getachew, G., W. Pitroff, E.J. DePeters, D.H. Putnam, A. Dandekar, and S. Goyal. 2008. Influence of tannic acid application on alfalfa hay: in vitro rumen fermentation, serum metabolites and nitrogen balance in sheep. Animal 2:3 pp 381-390.

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Mueller, S.C., D. J. Undersander, and D.H. Putnam. 2008. Alfalfa for Industrial and Other Uses. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8305. Oakland, CA.

Getachew, G., W. Pitroff, D.H. Putnam, A. Dandekar, S. Goyal, and E.J. DePeters. 2008. The influence of addition of gallic acid, tannic acid, or quebracho tannins to alfalfa hay on in vitro rumen fermentation and microbial protein synthesis. Animal Feed Science and Technology  140: 444-461.

Van Deynze, A., S. Fitzpatrick, B. Hammond, M. H. McCaslin, D.H. Putnam, L.R. Teuber, and D.J. Undersander. 2008. Gene Flow in Alfalfa:  Biology, Mitigation, and Potential Impact on Production. Special Publication No. 28.  Council for Agricultural Science and Technology (CAST), Ames, IA.

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Davy, J.S., DiTomaso, J.M. and Laca, E.A. 2008. Barb goatgrass. ANR Publication 8315, October 2008, University of California, Agriculture and Natural Resources Communication Services, Oakland, CA, 5 pp.

Yasuor, H., P.L. TenBrook, R. S. Tjeerdema, and A. J. Fischer. 2008. Responses to clomazone and 5-ketoclomazone by Echinochloa phyllopogon resistant to multiple herbicides in Californian rice fields. Pest management Science 64:1031–1039.

Figueroa, R., M. Gebauer, A. Fischer, and M. Kogan. 2008. Resistance to bensulfuron-methyl in water plantain (Alisma plantago-aquatica) Populations from Chilean Paddy Fields. Weed Technology 22:602-608.

Forero, Larry, Melvin George, Barbara Reed. 2008. Forage and grazing management. Reed, Barbara and Larry Forero (Eds.).  Irrigated Pasture Production in the Central Valley of California.  Publ. 21628, Univ. of Calif. Div. of Agric. and Nat. Res.  69 pgs.

George, MR, NK McDougald, WA Jensen, RE Larsen, DC Cao, and NR Harris. 2008. Effectiveness of nutrient supplement placement for changing beef cow distribution. Journal of Soil and Water Conservation. 63:11-17.

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George, Melvin, Royce, Larsen, Morgan Doran, Karl Striby. 2008. Shallow Fine Loamy Ecological Site Description (R015XI006CA). Ecological Site Information System, USDA Natural Resources Conservation Service (http://esis.sc.egov.usda.gov).

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George, Melvin, Theresa Becchetti, Ken Oster and Shiela Barry. 2008. Shallow Loamy Upland Ecological Site Description (R015XI011CA). Ecological Site Information System, USDA Natural Resources Conservation Service (http://esis.sc.egov.usda.gov/).

George, Melvin, Sheila Barry, Theresa Becchetti, Morgan Doran and Ken Oster. 2008. Deep Clay Ecological Site Description (R015XI009CA). Ecological Site Information System, USDA Natural Resources Conservation Service (http://esis.sc.egov.usda.gov/).

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George, Melvin, Sheila Barry, Stephanie Larson, Theresa Becchetti, John Harper, Royce Larsen, Craig Schriefer, and Karl Striby. 2008. Fine Loamy Upland Ecological Site Description (R015XI012CA). Ecological Site Information System, USDA Natural Resources Conservation Service (http://esis.sc.egov.usda.gov/).

Kliebenstein, D.J. 2008. A quantitative genetics and ecological model system: Understanding the aliphatic glucosinolate biosynthetic network via QTLs. Phytochemistry Reviews v(i).

Bidart-Bouzat, M.G. and D.J. Kliebenstein. 2008. “Differential levels of insect herbivory in the field associated with genotypic variation in glucosinolates in Arabidopsis thaliana”. Journal of Chemical Ecology 34(8)1026-1037.

Wolf A., Saliendra N., Akshalov K., Johnson D.A., Laca E.A. 2008. Effects of different eddy covariance correction schemes on a energy balance closure and comparisons with the modified Bowen ratio system. Agricultural And Forest Meteorology Vol 148 (6-7), 942-952.

Vossen, P.M., M.J. Berenguer, S.R. Grattan, J.H. Connell, V.S. Polito. 2008. Influence of different levels of irrigation on the chemical and sensory properties of olive oil. Acta Hort. (ISHS) 791:439-444.

Pairon, M., D. Potter, and A-L. Jacquemart. 2008. Detection and characterization of genome-specific microsatellite markers in the allotetraploid Prunus serotina. Journal of the American Society of Horticultural Science 133:390-395.

Shulaev, V., S.S. Korban, B. Sosinski, A.G. Abbott, H.S. Aldwinckle, K.M. Folta, A. Iezzoni, D. Main, P. Arus, A.M. Dandekar, K. Lewers, S.K. Brown, T.M. Davis, S.E. Gardiner, D. Potter, and R. E. Veilleux. 2008. Multiple models for Rosaceae genomics. Plant Physiology 147:985-1003.

Wen, J., S.T. Berggren, C.-H. Lee, S. Ickert-Bond, T.-S. Yi, K.-O. Yoo, L. Xie, J. Shaw, and D. Potter. 2008. Phylogenetic inferences in Prunus (Rosaceae) using chloroplast ndhF and nuclear ribosomal ITS sequenes. Journal of Systematics and Evolution 46:322-332.

Tsukamoto, T., D. Potter, R. Tao, C.P. Vieira, J. Vieira, and A.F. Iezzoni. 2008. Genetic and molecular characterization of three novel S-haplotypes in sour cherry (Prunus cerasus L.). Journal of Experimental Botany 59:3169-3185.

Celorio-Mancera, M., Allen, M.L., Powell, Ann L.T., Ahmadi, H., Salemi, M.R., Phinney, B.S., Shackel, K.A., Greve, L., Teuber, L.R., Labavitch, J.M. 2008. Polygalacturonase Causes Lygus-like Damage on Plants: Cloning and Identification of Western Tarnished Plant Bug (Lygus hesperus) Polygalacturonases Secreted During Feeding. Arthropod-Plant Interactions. 2:215-225.

Young, S.L., J. N. Barney, G. B. Kyser, T. S. Jones, and J.M. DiTomaso. 2008. Functionally similar species confer greater resistance to invasion: Implications for grassland restoration. Ecological Rest. 26(4):357-364.

Enloe, S.F., G.B. Kyser, S.A. Dewey, V. Peterson, and J.M. DiTomaso. 2008. Russian Knapweed (Acroptilon repens) Control with Low Rates of Aminopyralid in Range and Pasture. Invasive Plant Science and Management 1(4):385-389.

Kyser, G.B., M. P. Doran, N.K. McDougald, S. B. Orloff, R. N. Vargas, R. G. Wilson, and J. M. DiTomaso. 2008. Site Characteristics Determine the Success of Prescribed Burning for Medusahead (Taeniatherum caput-medusae) Control. Invasive Plant Science and Management 1(4):376-384.

García-Méndez, E., D. García-Sinovas, M. Becerril, A. De Cal, P. Melgarejo, A. Martínez-Teceño, S. Fennimore, C. Soria, J.J. Medina and J.M. López-Aranda. 2008. Chemical Alternatives to Methyl Bromide for Weed Control and Runner Plant Production in Strawberry Nurseries. HortScience. 43:177-182.

Fennimore, S.A., J.M. Duniway, G.T. Browne, F.N. Martin, H.A. Ajwa, B.B. Westerdahl,  R.E. Goodhue, M.J. Haar and C.Q. Winterbottom. 2008. Methyl bromide alternatives evaluated. California Agriculture: Vol. 62: No. 2, Page 62-67. http://repositories.cdlib.org/anrcs/californiaagriculture/v62/n2/p62.

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David C. Slaughter, D. Ken Giles, Steven A. Fennimore, and Richard F. Smith. 2008. Multispectral Machine Vision Identification of Lettuce and Weed Seedlings for Automated Weed Control. Weed Technology. 22:378-384.

Fennimore, S.A., M.J. Haar, R.E. Goodhue, and C.Q. Winterbottom. 2008. Weed Control in Strawberry Runner Plant Nurseries With Methyl Bromide Alternative. HortScience 43:1495-1500.

Hill, H., Bradford, K.J., Cunningham, J., and Taylor, A.G. 2008. Primed lettuce seeds exhibit increased sensitivity to moisture during aging. Acta Hortic. 782: 135-141.

Selma, M.V., A.M. Ibáñez, A. Allende, M. Cantwell and T. Suslow. 2008. Reduction by gaseous ozone of Salmonella and microbial flora associated with fresh-cut cantaloupe. Food Microbiology 25(4): 558-565.

Lopez, G., R.R. Favreau, C. Smith, E. Costes, P. Prusinkiewicz and T.M. DeJong. 2008. Integrating simulation of architectural development and source-sink behaviour of peach trees by incorporating Markov chains and physiological organ function sub-models into L-PEACH. Functional Plant Biology Vol 35(9 & 10), 761-771.

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DiTomaso, J. M., G. B. Kyser, M. R. George, M. P. Doran, E. A. Laca. 2008. Control of Medusahead using Timely Sheep Grazing. Invasive Plant Science and Management 1:241-247.

Sweet, S. B., G. B. Kyser, and J. M. DiTomaso. 2008. Susceptibility of Exotic Annual Grass Seeds to Fire. Invasive Plant Science and Management 1:158-167.

Moody, M.L., D.H. Les, and J.M. DiTomaso. 2008. The role of plant systematics in invasive aquatic plant management. J. Aquatic Plant Manage. 46:7-15.

Younga, S.L., J.N. Barneyb, G.B. Kyserd, T.S. Jonesa, and J.M. DiTomaso. 2008. Comparing functional diversity and functional similarity to Centaurea solstitialis (yellow starthistle) for resistance to invasion. Invasive Plant Science and Management 1(4):399-413   .

Enloec, S.F., G.B. Kyserd, S.A. Deweyc, V. Petersonh, and J.M. DiTomaso. 2008. Russian Knapweed (Acroptilon repens) Control with Low Rates of Aminopyralid in Range and Pasture. Invasive Plant Science and Management 1(4):385-389.

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Cantu D., Vicente A.R., Greve L.C., Dewey F.M., Bennett, A.B., Labavitch, J.M., Powell, Ann L.T.. 2008. The intersection between cell wall disassembly, ripening and fruit susceptibility to B. cinerea. Proc. Natl. Acad. Sci. 105:859-864.

Bennett, A.B., Labavitch, J.M. 2008. Ethylene and ripening-regulated expression and function of fruit cell wall modifying proteins. Plant Science 175:130-136.

Cantu D., Vicente A.R., Greve L.C., Dewey F.M., Bennett, A.B., Labavitch, J.M., Powell, Ann L.T.. 2008. Strangers in the matrix: plant cell wall and pathogen susceptibility. Trends in Plant Sci. Vol 13(11), 610-617.

Burow, M., Zhang, Z.-Y., Ober, J.A., Lambrix, V.M., Wittstock, U., Gershenzon, J. and D.J. Kliebenstein. 2008. ESP and ESM1 mediate Indol-3-acetonitrile production from Indol-3-ylmethyl glucosinolate in Arabidopsis. Phytochemistry 69(3)663-671.

Wilson, R.G., D. Boelk, G. B. Kyser, and J. M. DiTomaso. 2008. Integrated management of perennial pepperweed. Invasive Plant Science and Management 1:17-25.

DiTomaso, J.M., J.J. Drewitz, and G. B. Kyser. 2008. Jubatagrass  (Cortaderia jubata) control using chemical and mechanical methods. Invasive Plant Science and Management 1: 82-90.

Rice, K.J. and E.E. Knapp. 2008. Effects of competition and life history stage on the expression of local adaptation in two native bunchgrasses. Restoration Ecology 16 (1): 12-23.

Adams-Phillips, L., Wan, J., Tan, X., Dunning, M., Meyers, B., Michelmore, R, & Bent, A. 2008. Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R/avr interactions. MPMI Vol. 21:646–657.

Kuang, H., Caldwell, K.S.,  Meyers, B.C., & Michelmore, R.W. 2008. Frequent sequence exchange between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity. Plant J. 2008 Apr;54(1):69-80.

Heesacker, A., Kishore, V.K., Gao, W., Tang, S.,Kolkman, J.M., Gingle, A.,  Matvienko, M., Kozik, A., Michelmore, R.W., Lai, Z., Rieseberg, L.H., and Knapp S.J. 2008. SSRs and INDELs mined from the sunflower EST database : abundance, polymorphisms, and cross-taxa utility. Theoretical and Applied Genetics, vol. 117(7):1021-1029.

McGranahan, Gale and Joe Grant. 2008. Walnuts. J .Janick (ed). Encyclopedia of Fruits and Nuts. CABI  Oxfordshire UK.

Tan, X., Meyers, B.C., Kozik, A., Morgante, M., West, M., St. Clair, D., Bent, A., & Michelmore, R.W. 2008. Global Expression Analysis of NBS-LRR Encoding Genes in Arabidopsis. BMC Plant Biology, 7:56.

Getachew, G., W. Pittroff, D. Putnam, A. Dandekar, S. Goyal, E.J. DePeters. 2008. The Influence of Addition of Tannins to Alfalfa Hay on in vitro rumen fermentation and microbial protein synthesis. Animal feed science and technology, vol. 140, (3-4): 444-461.

George, Melvin, Neil McDougald, and Dennis Dudley. 2008. Loamy Ecological Site Description (R018XI004CA). Ecological Site Information System, USDA Natural Resources Conservation Service (http://esis.sc.egov.usda.gov/).

Spann, T.M., R.H. Beede, and T.M. DeJong. 2008. Neoformed growth responses to dormant pruning in mature and immature pistachio trees grown on different rootstocks. Journal of Horticultural Science & Biotechnology 83:137-142.

Spann, T.M., R.H. Beede, and T.M. DeJong. 2008. Seasonal carbohydrate storage and mobilization in bearing and non-bearing pistachio (Pistacia vera) trees. Tree Physiology 28:207-213.

Heerema, R.J., S.A. Weinbaum, F. Pernice, and T.M.DeJong. 2008. Spur survival and return bloom in almond [Prunus dulcis (Mill.) D.A. Webb] varied with spur fruit load, specific leaf weight, and leaf area. Journal of Horticultural Science and Biotechnology 83:274-281.

Barney, J.N. and J.M. DiTomaso. 2008. Non-native species and bioenergy: are we cultivating the next invader?. BioScience 58(1):64-70.

Michael Raviv and J.H. Lieth, editors. 2008. Soilless Culture: Theory and Practice. Elsevier B.V., Oxford UK, Amsterdam NL, and Burlington MA USA. pp 573.

Michael Raviv and J.H. Lieth. 2008. Significance of Soilless Culture in Agriculture. Chapter 1. In: Soilless Culture: Theory and Practice, eds.: Michael Raviv and J.H. Lieth. Elsevier Publisher, p. 1–10.

E. A. van Os, Th. H. Gieling and J. H. Lieth. 2008. Technical Equipment in Soilless Production Systems. Chapter 5. In: Soilless Culture: Theory and Practice, eds.: Michael Raviv and J.H. Lieth. Elsevier Publisher, p. 157–208.

Michael Raviv, J.H. Lieth, A. Bar-Tal and A. Silber. 2008. Growing Plants in Soilless Culture: Operational Conclusions. Chapter 13. In: Soilless Culture: Theory and Practice, eds.: Michael Raviv and J.H. Lieth. Elsevier Publisher, p. 545–572.

Gepts P. 2008. Tropical Environments, Biodiversity, and the Origin of Crops. Moore P, Ming R (eds), Genomics of Tropical Crop Plants, Springer, Ch.1.

Gepts P, Aragão F, de Barros E, Blair MW, Brondani R, Broughton W, Galasso I, Hernández G, Kami J, Lariguet P, McClean P, Melotto M, Miklas P,  Pauls P., Pedrosa-Harand A, Porch T, Sánchez F, Sparvoli F, Yu K. 2008. Genomics of Phaseolus beans, a major source of dietary protein and micronutrients in the tropics. Moore P, Ming R (eds), Genomics of Tropical Crop Plants, Springer, Ch.5.

McClean PE, Gepts P, Jackson S, Lavin M. 2008. Phaseolus vulgaris: A Diploid Model for Glycine. Stacey G (ed), Genomics of soybean. Springer, Berlin, Ch.4.

Socias i Company R., O. Kodad, J.M. Alonso and J.T.M. Gradziel. 2008. Almond Quality: A Breeding Perspective. J. Janick (ed.) Horticultural Reviews. 34:197-238.

Gradziel, T.M.  and J.P. McCaa. 2008. Processing Peach Cultivar Development. In D.R. Layne and D. Bassi (eds.).  The Peach. CABI London. Ch.7.

Gradziel, T.M., M.A. Thorpe and D. M. Barrett. 2008. ‘Lilleland’ Peach:  a High Case-yield  Processing Clingstone Peach for the  ‘Halford’ Maturity Period. HortScience  43(2):542-543.

Gradziel, T.M. 2008. Almond (Prunus dulcis). M. Priyadarshan and S.M. Jain (eds). Breeding of Plantation crops. Springer Science publishers.  pp.  1-33.

Chapin, FS, CA Brewer, VT Eviner, DS Keebler, DR Magness, LM Talbot, BA Wilcox. 2008. Disease effects on landscape and regional systems: a resilience framework. R Ostfeld, F Keesing, V Eviner (eds) Cary Conference XI: Infectious disease ecology: the effects of ecosystems on disease and of disease on ecosystems. Princeton University Press. pp 284-303.

Burns, Jacqueline K., Louise Ferguson, Kitren Glozer, William H. Krueger, and Richard Rosecrance. 2008. Screening fruit loosening agents for black ripe processed table olives. HortScience 43(5):1449–1453.

Gradziel, T.M. 2008. Almonds. J. Janick and R E Paull (eds.) Encyclopedia of Fruit  and Nuts. Oxford University Press. Oxford. 19 pg..

Pavlovic, D., Vrbnicanin, S., Bozic, D., and Fischer, A. 2008. Morpho-physiological traits and atrazine sensitivity in Chenopodium album L. Pest management Science 64:101–107.

Linquist B., Fischer, A., Godfrey L., Greer C., Hill, J.E., Koffler K., Moeching M., Mutters R., and Van Kessel C. 2008. Minimum till Could benefit California rice farmers. California Agriculture 62:24-29.

Manganaris, G.A., C.H. Chrisosto A.R. Vicente,  and J.M. Labavitch. 2008. Cell wall modifications in chilling injured plum fruit Prunus salicina cv. Fortune. Postharvest Biology and Technology 48: 77–83.

C.M. Moravec, Bradford, K.J. and E.A. Laca. 2008. Water relations of drumstick tree seed (Moringa oleifera): imbibition, desiccation, and sorption isotherms. Seed Sci. & Technol.: Vol 36, 311-324.

Mattson, N.S., Lieth, J.H., Choi, G.L., and Kim, W.S. 2008. Changes in root surface area and nitrogen, phosphorus and potassium absorption activity of Rosa hybrida ‘Kardinal’ plants grown in solution culture during a growth cycle. Acta Hort. 766, p73-80.

Bradford, K.J., Benech-Arnold, R., Côme, D., and Corbineau, F. 2008. Quantifying the sensitivity of barley seed germination to oxygen, abscisic acid and gibberellin using a population-based threshold model. J. Exp. Bot. 59: 335-347.

Lin, K., D. Haver, Oki, L.R., and J. Gan. 2008. Transformation and sorption of fipronil in urban stream sediments. Journal of Agricultural and Food Chemistry 56:8594-8600.

Palmer, T.M., M.L. Stanton, Young, T.P., J.R. Goheen, R.M Pringle & R. Karban. 2008. Breakdown of an ant-plant mutualism following the loss of large herbivores from an African savanna. Science 319:192-195.

Okello, B.D., Young, T.P., C. Riginos, D. Kelly & T. O'Connor. 2008. Short-term survival and long-term mortality of Acacia drepanolobium after a controlled burn in Laikipia, Kenya. Journal of Ecology 46:395-401.

Infalt, S.B. & Young, T.P.. 2008. Forest restoration of campsites at Kings Canyon National Park, California. Ecological Restoration 26:302-310.

Ingolia, M., Young, T.P. & E.G. Sutter. 2008. Germination ecology of Rorippa subumbellata (Tahoe yellow cress), an endangered, endemic species of Lake Tahoe. Seed Science and Technology, 36:621-632.

McCauley, D.J., F. Keesing, Young, T.P. & K.Dittmar. 2008. Effects of the removal of large herbivores on fleas of small mammals. Journal of Vector Ecology 33:263-268.

Holmes, K.A., K.E. Veblen, Young, T.P., & Berry, A.M.. 2008. California oaks and fire: a review and case study. Pages 551-565 in: Merenlender, A., D. McCreary, and K.L. Purcell, eds. Proceedings of the Sixth California Oak Symposium: Today's Challenges, Tomorrow's Opportunities. 2006, October 9-12. General Technical Report PSW-GTR-217. Albany, CA: Pacific Southwest Research Station, Forest Service, U.S. Department of Agriculture. 699 pp..

Ogada, D., M.E. Gadd, R.S. Ostfeld, Young, T.P. & F. Keesing. 2008. Impacts of large herbivores on bird diversity and abundance in an African savanna. Oecologia 156:387-397.

Off, E.C., L.A. Isbell & Young, T.P.. 2008. Population density and habitat preferences of the Kenya Lesser Galago (Galago senegalensis braccatus) along the Ewaso Nyiro River, Laikipia, Kenya. Journal East African Natural History 97:109-116.

Reid, S.K. and Oki, L.R.. 2008. Field trials identify more native plants suited to urban landscaping. Calif. Ag. 62(3):97-104.

Laca, E.A. 2008. Foraging in a heterogeneous environment: intake and diet choice. In Editors: F. van Langevelde and H.H.T. Prins (Wageningen University, The Netherlands), Resource Ecology: Spatial and Temporal Dynamics of Foraging. Vol 23, Chapter 5A, 81-100.

Dan E. Parfitt, Craig E. Kallsen, Brent Holtz and Joseph Maranto. 2008. ‘Lost Hills’ A New Pistachio Cultivar for California. Hortscience 43(1):247–249.

Argyris, J.M., Dahal, P., Hayashi, E., Still, D.W., and Bradford, K.J.. 2008. Genetic variation for lettuce seed thermoinhibition is associated with temperature-sensitive expression of abscisic acid, gibberellin and ethylene biosynthesis, metabolism and response genes. Plant Physiol. 148: 926-947.

Bradford, K.J.. 2008. Shang Fa Yang: Pioneer in plant ethylene biochemistry. Plant Science 175: 2-7.

Johnson, R.S.. 2008. Nutrient and Water Requirements of Peach Trees. The Peach: Botany, Production and Uses, Chapter 13, pp. 303-331.

M. Jasieniuk, R. Ahmad, A.M. Sherwood, J.L. Firestone, A. Perez-Jones, W.T. Lanini, C. Mallory-Smith, and Z. Stednick. 2008. Glyphosate-resistant Italian ryegrass (Lolium multiflorum) in California:  distribution, response to glyphosate, and molecular evidence for an altered target enzyme. Weed Science 56:496-502.

M. Jasieniuk, M.L. Taper, N.C. Wagner, R.N. Stougaard, M. Brelsford, and B.D. Maxwell. 2008. Selection of a barley yield model using information-theoretic criteria. Weed Science 56:628-636.

Girvetz E.H. J.H. Thorne, Berry, A.M., J.A.G. Jaeger. 2008. Integration of landscape fragmentation analysis into regional planning: a statewide multi-scale case study from California, USA. Landscape & Urban Planning: Vol.86 (No.3-4).

P.H. Robinson, G. Getachew, and J.W. Cone. 2008. Evaluation of the extent of associative effects of two groups of four feeds using an in vitro gas production procedure. Animal Feed Science and Technology Vol 150, Issues 1-2, 9-17.

Zhang, W. and J. Dubcovsky. 2008. Association between allelic variation at the Phytoene synthase 1 (PSY-1) gene and yellow pigment content in the wheat grain. Theoretical and Applied Genetics, 116:635–645.

Distelfeld A., A. Korol, J. Dubcovsky, C. Uauy, T. Blake, and T. Fahima. 2008. Colinearity between the barley grain protein content (GPC) QTL on chromosome arm 6HS and the wheat Gpc-B1 region. Molecular Breeding, 22:25–38.

Knox, A.K., Chengxia Li, A. Vágújfalvi, G. Galiba, E.J. Stockinger, and J. Dubcovsky. 2008. Identification of candidate CBF genes for the frost tolerance locus Fr-Am2 in Triticum monococcum. Plant Molecular Biology, Jun 67(3):257-70.

Andrea K. Knox, Chengxia Li, Attila Vágújfalvi, Gabor Galiba, Eric J. Stockinger and Jorge Dubcovsky. 2008. Identification of candidate CBF genes for the frost tolerance locus Fr-Am2 in Triticum monococcum. International Wheat Genetics Symposium.

Jorge Dubcovsky, Chengxia Li, Assaf Distelfeld, B Pidal and Gabriela Tranquilli. 2008. Genes and gene networkd regulating wheat development. International Wheat Genetics Symposium.

Chengxia Li and Jorge Dubcovsky. 2008. Wheat FT protein regulates VRN1 transcription through interactions with FDL2. Plant J. 55(4), 543-554.

Wheeler, C.T., A.D. L. Akkermans and Berry, A.M.. 2008. Frankia and actinorhizal plants:  a historical perspective. Pawlowski, K; Newton, W. E. (Eds.) Nitrogen-fixing Actinorhizal Symbioses/ Nitrogen Fixation Series: Origins, Applications, and Research Progress, Vol. 6.

Wall, L.G. and Berry, A.M.. 2008. Early interactions, infection and nodulation in actinorhizal symbiosis. Pawlowski, K; Newton, W. E. (Eds.) Nitrogen-fixing Actinorhizal Symbioses/ Nitrogen Fixation Series: Origins,  Applications, and Research Progress.

Brown, Patrick H.. 2008. Chapter 12: Micronutrient use in agriculture in the United States of America:  Current practices, trends and constraints. Alloway, B.J (Ed.) Micronutrient Deficiencies in global crop production. Springer, Dordrecht. The Netherlands.

Burger, D.W. and Y.L. Qian. 2008. Predicting relative low-temperature tolerance of non-acclimatized buffalograss using calorimetric data. Thermochimica Acta 479: 7–11.

Glozer, K. and L. Ferguson. 2008. Pomegranate Production in Afghanistan. International Programs, U.C. Davis..

Glozer, K. 2008. Dynamic Model and Chill Accumulation Guide. http://groups.ucanr.org/treecrop/files/58532.pdf.

Glozer, K. 2008. Protocol for Leaf Image Analysis B Surface Area (Guide). http://groups.ucanr.org/treecrop/files/58526.pdf.

Glozer, K. 2008. Using the Pull Force Gauge: an FRF Guide. http://groups.ucanr.org/treecrop/files/54620.pdf.

Sergio Castro-Garcia, Uriel A. Rosa, Christopher J. Gliever, David Smith, Jacqueline K. Burns, William H. Krueger, Louise Ferguson and Kitren Glozer. 2008. Video Evaluation of Table Olive damage During Harvest with a Canopy Shaker. HortTech 19:260–266.

Crisosto, C.H. and  D. Valero. 2008. Harvesting and postharvest handling of peaches for the fresh market. D.R. Layne (ed.), The Peach: Botany, Production and Uses. Chapter 20.

María V. Selma , Alex Baker, Ana M. Ibáñez, Marita Cantwell, Trevor Suslow. 2008. Effect of gaseous ozone and hot water on sensorial and microbial quality of cantaloupe and potential transference of E. coli O157:H7 during fresh-cut processing. Food Microbiology 25, 162–168  .

Young, T.P. and C. Riginos. 2008. Cattle do compete with wildlife in Laikipia, even if they are “compatible”. (“KLEE Corner” #9). Laikipia Wildlife Forum Newsletter.  January Issue.

Hoque, M. Murshidul, Ajwa, Husein A. and Smith, Richard. 2008. Nitrite and Ammonium Toxicity on Lettuce Grown under Hydroponics. Communications in Soil Science and Plant Analysis, 39:1,207-216.

Wilkerson, M.L. and Young, T.P.. 2008. Butterflies and blooms: contrasting effects of cattle and wildlife. (“KLEE Corner” #10). Laikipia Wildlife Forum Newsletter.  May Issue.

Manganaris, G.A., Crisosto, C.H., V. Bremer, and D. Holcroft. 2008. Novel 1-methylcyclopropene immersion formulation extends shelf life of advanced maturity ‘Joanna Red’ plums (Prunus salicina Lindell). Postharvest Biology and Technology 47: 429–433.

Manganaris, G.A., A.R. Vicente, Crisosto, C.H., J.M. Labavitch. 2008. Cell wall modifications in chilling-injured plum fruit (Prunus salicina). Postharvest Biology and Technology 48: 77–83.

Crisosto, C.H. and  Guglielmo Costa. 2008. Preharvest factors affecting peach quality. D.R. Layne (ed.), The Peach: Botany, Production and Uses. Chapter 20.

Getachew, G. W. Pitteroff, D.H. Putnam, A. Dandekar, S. Goyal and E.J. DePeters. 2008. Influence of tannic acid application on alfalfa hay: in vitro rumen fermentation, serum metabolites and nitrogen balance in sheep. Animal, 2:3, pp 381–390.

Shaw, Douglas V. and Larson, K.D.. 2008. La genetica de las fresa, mejoramiento, fisiologia y manejo de produccion. California Strawberry Commission Annual Production Research Report: 2004-05, pp. 168-182.

Bonafede, M., O. Chicaiza, G. Tranquilli, and J. Dubcovsky. 2008. Registration of an hexaploid wheat translocation line carrying a short segment of chromosome 5Am including softness genes Pina and Pinb from Triticum monococcum. Journal of Plant Registration 2:165-166.

Brevis, J.C., Khan, I.A., Chicaaiza, O., Morris, C.F., Jackson, L.F., Dubcovsky, J. 2008. Agronomic and quality evaluation of common wheat near-isogenic lines carrying the leaf rust resistance gene Lr47. Crop Science 48:1441-1451.

Eviner, VT and GE Likens. 2008. Effects of disease on biogeochemical cycling. R Ostfeld, F Keesing, V Eviner (eds) Cary Conference XI: Infectious disease ecology: the effects of ecosystems on disease and of disease on ecosystems. Princeton University Press. pp. 260-283.

Eviner, VT. 2008. The effects of disease on communities and ecosystems: a new roadmap for predicting and managing ecosystems and diseases. R Ostfeld, F Keesing, V Eviner (eds) Cary Conference XI: Infectious disease ecology: the effects of ecosystems on disease and of disease on ecosystems. Princeton University Press.

Clivati-McIntyre, A.A., T.K. Hartz, C. Gunter and D.M. Francis. 2007. Fertility influence of Midwestern soils on yellow shoulder disorder in processing tomatoes. HortScience vol. 42, no6, pp. 1468-1472.

Strawn, M.A., S.K. Marr, K. Inoue, N. Inada, C. Zubieta, and M.C. Wildermuth. 2007. Arabidopsis isochorismate synthase functional in pathogen-induced salicylate biosynthesis exhibits properties consistent with a role in diverse stress responses. Journal of Biological Chemistry 282:5919-5933.

Ikegami, A., S. Eguchi, A. Kitajima, K. Inoue, and K. Yonemori. 2007. Identification of genes involved in proanthocyanidin biosynthesis of persimmon (Diospyros kaki) fruit. Plant Science 172:1037-1047.

Inoue, K. 2007. The chloroplast outer envelope: the edge of light and excitement. Journal of Integral Plant Biology. 49:1100-1111.

Hartz, T.K., P.R. Johnstone, E. Williams and R.F. Smith. 2007. Establishing lettuce leaf nutrient optimum ranges through DRIS analysis. HortScience 42:143-146.

Hartz, T.K. 2007. Detecting and correcting soil calcium limitations. CDFA Fertilizer Research and Education Program Final Report.

Hartz, T.K. 2007. Fertility management of processing tomatoes. Proceedings California Plant and soil conference, pp. 71-76.

Hartz, T.K. 2007. Detecting and correcting soil calcium limitations. Vegetable West 11(3):6-8.

Temple, S., Morris, C., Lowe, I., Gilbertson, B., Almeida, V., Godfrey, L., Canevari, M., Nadzir, M., Muehlbauer, F., and  UCCE Farm Advisors sTatewide. 2007. UC Davis Grain Legume Improvement and Statewide Support Activities, p. 1-21. University of California Dry Bean Research. 2006 Progress Report.

Canevari, M., Godfrey, L., Temple,S., Witte, R.,  Morris. C,. Jackson, J. 2007. Two-Spot Spider Mite (Tetranychus urticae) Control in Bush Baby Lima Beans. p. 22-23  University of California Dry Bean Research. 2006 Progress Report.

Canevari, M., Godfrey, L., Temple,S., Witte, R., Whiteley, S.,  Colbert, D.,  Morris. C,. Jackson, J. 2007. Control of the Lygus Bug with Steward (indoxacarb) in Lygus Tolerant Bush Baby Lima Bean Cultivard – IPM p. 24-28  . University of California Dry Bean Research. 2006 Progress Report.

Canevari, M., Godfrey, L., Temple,S., Witte, R., Whiteley, S.,  Colbert, D.,  Morris. C,. Jackson, J. 2007. Post-Emergent Herbicide Screening in Four Dry Bean Species. p. 34-36 University of California Dry Bean Research. 2006 Progress Report.

Canevari, M., Godfrey, L., Temple,S., Witte, R., Whiteley, S.,  Colbert, D.,  Morris. C,. Jackson, J. 2007. Garbanzo Variety Evaluation p. 41-42. University of California Dry Bean Research. 2006 Progress Report.

Godfrey L., Lewis, R., Pinkston, W., Canevari, M., Temple, S. 2007. Management of Lygus Bugs in Lima Beans. p. 61-66  University of California Dry Bean Research. 2006 Progress Report.

Ehlers, J., Roberts P., Temple, S., Matthews, W.,  Frate, C., Sanden, B. 2007. Blackeye Varietal Improvement – 2006 Progress Report. p. 43-60  University of California Dry Bean Research. 2006 Progress Report.

Frate, C., Mueller, S., Temple, S. 2007. Fungicide Evaluation for Sclerotinia Stem and Crown Rot (White Mold) in Garbanzo Beans. p. 77-79 University of California Dry Bean Research. 2006 Progress Report.

Chen, W., C.Frate, S.R.Temple, and F.J.Muehlbauer. 2007. Determining Species Identities of Sclerotinia isolated from Chickpea in the US. 9in) Proceedings. 2007 National Sclerotinia Initiative Annual Meeting. Jan 17-19, Minneapolis, MN. P17.

Frate,C.A., S.C.Mueller, S.R.Temple, and R.M.Davis. 2007. Sclerotinia White Mold of Garbanzos. ANR Pub 8260. 2pp..

Frate, C.A., S.C.Mueller, and S.R.Temple. 2007. Ascochyta Blight of Garbanzos. ANR Pub 8259. 2pp.

Johnson, C., Sundaresan, V. 2007. Regulatory small RNAs in plants. In Plant Systems Biology Birkhauser, Springer-Verlag, Switzerland, 99-113.

Griffith, M.E., Mayer, U., Capron, A., Ngo, Q., Surendrarao A., McClinton, R., Jurgens, G., Sundaresan, V. 2007. The TORMOZ gene encodes a nucleolar protein required for regulated division planes and embryo development in Arabidopsis. The Plant Cell, 19: 2246-2263.

Dewitte, W., Scofield, S., Alcasabas, A.A., Maughan, S.C., Menges, M., Braun, N., Collins, C., Nieuwland, J., Prinsen, E., Sundaresan, V., Murray, J.A.H. 2007. Arabidopsis CYCD3 D-type cyclins link cell proliferation and endocycles and are rate-limiting for cytokinin responses. Proc. Natl. Acad. Sci. USA, 104: 14537-42.

Minoshima, H., L.E.Jackson, T.R.Cavagnero, S.Sanchez-Moreno, H.Ferris, S.R.Temple, S.Goyal, and Mitchell, J.P.. 2007. Soil Food Webs and Carbon Dynamics in Response to Conservation Tillage in California. Soil Science Society of America Journal. 71(3):952-963.

Helms, D., W.Matthews, P.Roberts, and S. Temple. 2007. PI 632361: Patent: Lima Bean,  Cariblanco N, U.S. Plant Variety Protection 200300015. UC Ref # 20002-017-1.

Lanini, W.T. and P.M. Vossen. 2007. Organic Weed Management in Olive Orchards. In: Organic Olive Production Manual.  P.M. Vossen (ed.). University of California, Agriculture and Natural Resources Publ. 3505, pp. 58-62.

Faber, B.A., A. Shrestha,  W. T. Lanini, C.A. Wilen and P.A. Phillips. 2007. Avocado Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines.  http://www.ipm.ucdavis.edu/PMG/selectnewpest.avocado.html.

Elkin, R. B. and W. T. Lanini. 2007. Pear Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines. http://www.ipm.ucdavis.edu/PMG/selectnewpest.pears.html.

Lanini, W.T., E.M. Miyao, and K.J. Hembree. 2007. Tomato Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines. http://www.ipm.ucdavis.edu/PMG/selectnewpest.tomatoes.html.

Lieth, J.H. and Oki, L.R.. 2007. Irrigation in Soilless Production. Chapter 4. In: Soilless Culture: Theory and Practice, eds.: Michael Raviv and J.H. Lieth. Elsevier Publisher, p. 117–156.

Coates, R.W., M.J. Delwiche, Evans, R.Y., Oki, L.R., and Brown, Patrick H.. 2007. Site-specific water and nutrient application by wireless valve controller network. ASABE Annual Meeting, June 17-20, 2007. Paper No. 072247. St. Joseph, MI.  11 pages.

Ortega, O. R., E. Duran, C. Arbizu, R. Ortega, W. Roca, D. Potter, and C.F. Quiros. 2007. Pattern of genetic diversity of cultivated and non-cultivated mashua, Tropaeolum tuberosum, in the Cusco region of Perú. Genetic Resources and Crop Evolution 54:807-821.

Potter, D., T. Eriksson, R.C. Evans, S. Oh, J. Smedmark, D.R. Morgan, M. Kerr, K.R. Robertson, M. Arsenault, T.A. Dickinson, and C.S. Campbell. 2007. Phylogeny and classification of Rosaceae. Plant Systematics and Evolution 266:5-43.

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Klose, S., H.A. Ajwa, S.A. Fennimore, F.N. Martin, G.T. Browne, K.V. Subbarao. 2007. Dose response of weed seeds and soilborne pathogens to 1,3-D and chloropicrin. Crop Protection 26:535-542.

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Lopez, Geraldo, R.S. Johnson, T.M. DeJong. 2007. High spring temperatures decrease peach fruit size. California Agriculture 61(1):31-34.

Ferguson, Louise. 2007. Fig (Ficus carica); Sequoia. University of California, Selection 24-50E Patent.  8 pp..

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Glozer, Kitren and Louise Ferguson. 2007. Apricot production in Afghanistan. 39 pp.  International Programs, U.C. Davis.

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DiTomaso, J.M and G. B. Kyser. 2007. Control of Ailanthus altissima using stem herbicide application techniques. Arboriculture and Urban Forestry 33:55-63.

Luo M.C., Young, Z.L., Kawahara, T., You, F., Dvorak, J. 2007. The structure of wild and domesticated emmer wheat populations, gene flow between them, and the site of emmer domestication. Theor. Appl.  Genet., vol. 114(6), pp. 947-959.

Akhunov E.D., Akhunova, A.R. and Dvorak J. 2007. Mechanisms and rates of  birth and death of dispersed duplicated genes during the evolution of a multigene family in diploid einkorn wheat. Mol. Biol Evol. 24:539-550.

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Barbour, M.G., Solomeshch, A.I., and J.J. Buck. 2007. Classification, ecological characterization, and presence of listed plant taxa of vernal pool associations in California. Final Report for United States Department of Fish and Wildlife. Department of Plant Sciences, UC Davis, CA. http://www.vernalpools.org/documents/Barbour_et_al_2007.pdf.

Okada, M., R. Ahmad, and M. Jasieniuk. 2007. Microsatellite variation points to local landscape plantings as sources of invasive pampas grass (Cortaderia selloana) populations in California. Molecular Ecology.Vol.16(23):4956-71.

Ahmad, R., I. Liow, D. F. Spencer, and M. Jasieniuk. 2007. Molecular evidence for a single clonal origin of invasive Arundo donax in the United States. Aquatic Botany, Vol.88(2):113-120.

Chen, J., Agrawal, V., Rattray, M., West, M.A.L., St. Clair, D.A., Michelmore, R.W., Coughlan, S.J., Meyers, B.C. 2007. A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. BMC Genomics, 8:414.

Rice, K.J. and E.K. Espeland. 2007. Genes on the range: Population genetics. In: Ecology and Conservation of California Grasslands.  J. Corbin, C. D’Antonio, M. Stromberg eds.  University of California Press, Berkeley CA. In Press. Chap. 11.

Mitchell, J.P., D.S. Munk, B. Prys, K. Klonsky, J.F. Wroble and R.L. DeMoura. 2007. Conservation tillage cotton production systems in the San Joaquin Valley. California Agriculture  Volume 60, Number 3:140-145.

Peace, C.P., A.M. Callahan, E.A. Ogundiwin, D. Potter, T.M. Gradziel, F.A. Bliss, and Crisosto, C.H.. 2007. Endopolygalacturonase genotypic variation in Prunus. Acta Horticulturae 738:639-646.

Martínez-Gómez,  P.,  K.  Majourhat, M. Zeinalabedini, D. Erogu, M. Khayam-Nekoui, V. Grigorian, A. Hafidi, A. Piqueras, and T.M. Gradziel. 2007. Use of Biotechnology for Preserving Rare Fruit Germplasm. Bioremediation, Biodiversity and Bioavailability, Global Science Book, pp. 31-40.

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De Graaff, M.A., Six, J.W., and C. Van Kessel. 2007. Elevated CO2 increases N rhizodeposition and microbial immobilization of root-derived N. New Phytologist, 173:778-786.

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DiTomaso, J.M., B. Reed, and L. Forero. 2007. Weed Control. Pages 31-35 in Irrigated Pasture Production in the Central Valley of California. Univ. California ANR Publ. #21628.

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Potter, D., S.M. Still, T. Grebenc, D. Ballian, G. Božic, J.  Franjiæ, and H. Kraigher. 2007. Phylogenetic relationships in tribe Spiraeeae (Rosaceae) inferred from nucleotide sequence data. Plant Systematics and Evolution 266:105-118.

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Gradziel, T.M. 2007. ‘Sweetheart’ Almond: Disclosure and Declaration of Plant Patent/ Record of Invention/United States Application for Letters Plant Patent. Attorney Docket No. 514112901700. 30pg.

Papa R, Bellucci R, Rossi M, Leonardi S, Rau D, Gepts P, Nanni L, Attene G. 2007. Tagging the signatures of domestication in common bean (Phaseolus vulgaris L.). Ann. Bot. Online Http://dx.doi.org/10.1093/aob/mcm151.

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Mattos Grisi MC de, Vianello Brondani RP, Gepts P, Blair MW, Arraes Pereira P. 2007. Genetic mapping of a new set of microsatellite markers in a reference common bean (Phaseolus vulgaris) population BAT93 x Jalo EEP558. Genet Molec Res 6: 691-706. http://www.funpecrp.com.br/GMR/year2007/vol3-6/gmr0340_abstract.html.

Bennett, A.B., Chi-Ham, C.L., Graff G., Boettiger S. 2007. Intellectual property in agricultural biotechnology – Strategies for open access. Neal Stewart (ed), Plant Biotechnology and Genetics: Principles, Techniques and Applications, J. Wiley & Sons, New York pp 325-342.

Ji, Y. and R.T. Chetelat. 2007. GISH analysis of meiotic chromosome pairing in Solanum lycopersicoides introgression lines of cultivated tomato. Genome: 50(9):825-33.

Bennett, A.B., Carriere, M. 2007. The University of California’s strawberry licensing program. A. Krattiger (ed), Handbook of Best Practices in Intellectual Property Management for Health and Agriculture, pp. 1833-1836.

Bennett, A.B.. 2007. Conflicts of interest and conflicts of commitment in technology transfer. A. Krattiger (ed), Handbook of Best Practices in Intellectual Property Management for Health and Agriculture, pp. 527-536.

Boettiger S., Bennett, A.B.. 2007. PIPRA: A resource for collaborative intellectual property management in agriculture. J. Intellectual Prop. Rights 12:86-91.

Urbanowicz B.R., Bennett, A.B., del Campillo E., Catalá C., Hayashi T., Henrissat B., Höfte H., McQueen-Mason S.J., Patterson S.E., Shoseyov O., Teeri T., Rose J.K.C. 2007. Structural organization and a standardized nomenclature for plant endo-1,4-?-glucanases (‘Cellulases’) of glycosyl hydrolase family 9 (GH9). Plant Physiol 144:1693-1696.

Víctor Flors V., de la O Leyva M., Viñedo B., Finiti I., Real M.D., García-Agustín P., Bennett, A.B., González-Bosch C. 2007. Absence of endo-1,4-glucanases Cel1 and Cel2 reduces susceptibility to B. cinerea in tomato. Plant J 52:1027-1040.

Lopez, G. and T.M. DeJong. 2007. Spring temperatures have a major effect on early stages of peach fruit growth. J. Hort. Sci. and Biotechnology 82:507-512.

Spann, T.M.,  R.H. Beede, and T.M. DeJong. 2007. Preformation in vegetative buds of Pistachio (Pistacia vera): relationship to shoot morphology, crown structure and rootstock vigor. Tree Physiology 27: 1189-1196.

Gordon, D. and T.M. DeJong. 2007. Current-year and subsequent-year effects of crop load manipulation and epicormic-shoot removal on distribution of long, short and epicormic shoot growth in Prunus persica. Annals of Botany 99:323-332.

Basile, B. and T. M. DeJong. 2007. La riduzione del vigore delle piante arboree da frutto mediante il portinnesto (Reduction of fruit tree vigor induced by rootstocks). Italus Hortus 14:58-69.

DeJong, T.M. 2007. Canopy and light management. Pear Production and Handling Manual, E.J. Mitcham and R.B. Elkins, eds. UCANR Publication 3483.

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Chivenge, P.P., H. K. Murwira, K. E. Giller, P. Mapfumo and Six, J.W.. 2007. Long-term impact of tillage and residue management on soil carbon stabilization: Implications for conservation agriculture on contrasting soils. Soil & Tillage Research, 94:328-337.

van Groenigen, K.J., Six, J.W., D. Harris, and C. Van Kessel. 2007. Elevated CO2 does not favor a fungal decomposition pathway. Soil Biol. Biochem., 39:2168-2172.

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Tate, K.W. 2007. Long-Term Environmental Effects of Conifer Removal to Achieve Aspen Release in Near-Stream Areas within the Northern Sierras. USDA Lassen National Forest.

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Burger, D.W., P.A. Kiehl, Z.A. Taylor, and T.D. Prager. 2007. Deep-rooted trees for urban environments: Selection and propagation. Journal of Arboriculture and Urban Forestry, Vol. 34, No. 3.

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Simpson, T., V. Bikoba, C. Tipping, and E.J. Mitcham. 2007. Ethyl formate as a postharvest fumigant for selected pests of table grapes. J. Econ. Entomol. 100(4): 1084-1090  .

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Orloff, S.B., and D.H. Putnam. 2007. Harvest Strategies for Alfalfa. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8299. Oakland, CA.

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George, Melvin, Wayne Jensen, Royce, Larsen, Karl Striby. 2007. Coastal Fine Loamy Ecological Site Description (R015XI004CA). Ecological Site Information System, USDA Natural Resources Conservation Service (http://esis.sc.egov.usda.gov/).

George, Melvin, John Harper, Stephanie Larson, Michael Lennox. 2007. Loamy Ecological Site Description (R015XI005CA). Ecological Site Information System, USDA Natural Resources Conservation Service (http://esis.sc.egov.usda.gov/).

George, Melvin, Dustin Flavel, Bill Frost, Mike Connor, Martin Beaton, Roger Ingram, and Larry Forero. 2007. Gravelly Loam Foothills Ecological Site Description (R018XI001CA). Ecological Site Information System, USDA Natural Resources Conservation Service (http://esis.sc.egov.usda.gov/).

George, Melvin, Neil McDougald, Dennis Dudley, and Jim Sullins. 2007. Granitic Ecological Site Description (R018XI002CA). Ecological Site Information System, USDA Natural Resources Conservation Service (http://esis.sc.egov.usda.gov/).

Keeler-Wolf, T., Evens, J.M., Solomeshch, A.I., Holland, V.L., and M.G.Barbour. 2007. Chapter 3. Community classification and nomenclature. In: Stromberg, M., Corbin, J., and C. D’Antonio. (ed.), Ecology and Management of California Grasslands, UC Press, Berkeley, CA. .

Isbell, L.A. & Young, T.P.. 2007. Interspecific and temporal variation in domatia contents of the ant-plant Acacia drepanolobium, a staple food for patas monkeys (Erythrocebus patas) in Laikipia, Kenya. American Journal of Primatology 69:1387-1398.

Park, I.M., A.M. Ibanez, F. Zhong, and C.F. Shoemaker. 2007. Rice starch molecular size and its relationship with amylose content. Starch/Starke 59:69-77.

Veenstra, Jessica J., William R. Horwath, and Mitchell, J.P.. 2007. Tillage and cover cropping effects on aggregate-protected carbon in cotton and tomato. Soil Sci. Soc. Am. J. 71:362-371.

Mitchell, J.P., Stu Pettrgrove, Dan Munk, Tom Barcellos, Andy Zylstra, and Mike Crowell. 2007. No-Tillage in California:  Historical developments and emerging trends. No-Till Farming Systems, Special Publication III of the World Association of Soil and Water Conservation, pages 135-144.

Shrestha, Anil, Mitchell, J.P., and W.Thomas Lanini. 2007. Subsurface drip irrigation as a weed management tool for conventional and conservation tillage tomato (Lycopersicon esculentum Mill.) production in semi-arid agroecosystems. J. Sustainable Ag.  31(2):91-112.

Sivakumar, Bellie, Wesley, W. Wallender, William R. Horwath and Mitchell, J.P.. 2007. Nonlinear deterministic analysis of air pollution dynamics in a rural and agricultural setting. Advances in Complex Systems.  Vol. 10(4):581-597.

Balkcom, Kipling, Harry Schomberg, Wayne Reeves, and Andy Clark with Louis Baumhardt, Hal Collins, Jorge Delgado, Sjoerd Duiker, Tom Kaspar and Mitchell, J.P.. 2007. Managing cover crops in conservation tillage systems. Managing cover crops profitably.  Third Edition.  Handbook Series Book 9.  Sustainable Agriculture Network, Beltsville, MD.  44-61.

Hansonb, B., D.H. Putnam, and R. Snyderb. 2007. Deficit Irrigation Of Alfalfa As A Strategy for Providing Water For Nonagricultural Uses. Proceedings, Irrigation Association 27th annual Irrigation Seminar.

Putnam, D.H., C.G. Summers, and S.B. Orloff. 2007. Alfalfa Production Systems in California. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8287. Oakland, CA http://alfalfa.udavis.edu/IrrigatedAlfalfa.

Putnam, D.H., S.B. Orloff, L.R. Teuber. 2007. Choosing an Alfalfa Variety. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8291. Oakland, CA.

Orloff, S.B., and D.H. Putnam. 2007. Harvest Strategies for Alfalfa. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8299. Oakland, CA.

Canevari, Mc., and D.H. Putnam. 2007. Managing Depleted Alfalfa Stands:  Overseeding and Other Options. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8301. Oakland, CA.

Klonsky, K., B. Reed, and D.H. Putnam. 2007. Alfalfa Marketing and Economics. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8309. Oakland, CA.

Plesha, M.A., T-K. Huang, A.M. Dandekar, B. Falk and K.A. McDonald. 2007. High-level transient production of a heterologous protein in plants by optimizing induction of a chemically inducible viral amplicon expression system. Biotechnol. Prog., vol. 23, pp. 1277-1285.

Britton, M.T., C.H. Leslie, E. Carboni, A.M. Dandekar and G.H. McGranahan. 2007. Persian Walnut. Ed: Chitta Cole. Pub.  In: Transgenic Series IV.

Schwankl, Lawrence J., Johnson, R.S. and Terry L. Prichard. 2007. Irrigation. The Home Orchard: Growing Your Own Deciduous Fruit and Nut Trees, Chapter 5, pp. 47-55. University of California Agriculture and Natural Resources, Publication 3485.

Putnam, D.H., C.G. Summers, and S.B. Orloff. 2007. Alfalfa Production Systems in California. (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8287. Oakland, CA http://alfalfa.udavis.edu/IrrigatedAlfalfa.

Putnam, D.H., S.B. Orloff, L.R. Teuber. 2007. Choosing an Alfalfa Variety.  In: (C.G. Summers and D.H. Putnam, eds.) Irrigated Alfalfa Management for Mediterranean and Desert Zones. Peer Reviewed University of California Agriculture and Natural Resources Publication 8291. Oakland, CA.

Leger, E.A. and Rice, K.J.. 2007. Assessing the speed and predictability of local adaptation in invasive California poppies (Eschscholzia californica). Journal of Evolutionary Biology 20: 1090-1103.

Sambatti, J.B.M. and Rice, K.J.. 2007. Functional ecology of ecotypic differentiation in the Californian serpentine sunflower (Helianthus exilis). New Phytologist 175: 107-119.

Espeland, E.K. and Rice, K.J.. 2007. Facilitation along stress gradients: The importance of local adaptation. Ecology 88: 2404-2409.

Finzi, A. C., R. J. Norby, C. Calfapietra, A. Gallet-Budynek, B. Gielen, W. E. Holmes, M. R. Hoosbeek, et al. 2007. Increases in nitrogen uptake rather than nitrogen-use efficiency support high rates of temperate forest productivity under elevated CO2. Proceedings of the National Academy of Sciences 104:14014-14019.

Zak, D. R., W. E. Holmes, and K. S. Pregitzer. 2007. Atmospheric CO2 and O3 alter the flow of 15N in developing forest ecosystems. Ecology 88:2630-2639.

Gao M, G. Li, Yang B, Qiu, D, Farnham, M, Quiros, CF. 2007. High-density Brassica oleracea linkage map: identification and useful linkages. Theor Appl. Genet 115:227-287.

Shackel, K.A. 2007. Water relations of woody perennial plant species. J. Int. des Sci. de la Vigne et du vin 41(3):121-129.

Tate, K.W., D.L. Lancaster, and D.F. Lile. 2007. Assessment of Thermal Stratification within Stream Pools as a Mechanism to Provide Refugia for Native Trout in Hot, Arid Rangelands. Environmental Monitoring and Assessment. 124:289-300.

Knox, A.K., K.W. Tate, R.A. Dahlgren, and E.R. Atwill. 2007. Wetland filters, Irrigation and Grazing Management can Reduce E. coli Concentrations in Pasture Runoff. California Agriculture. 61:159-165.

Bartolome, J.W., R.D. Jackson, A.D.K. Betts, J.M. Connor, G.A. Nader, K.W. Tate. 2007. Effects of Residual Dry Matter Net Primary Production and Plant Functional Groups in California Annual Grasslands. Grass and Forage Science. 62: 1-8.

Harter, T., E.R. Atwill, L. Hou, B.M. Karle, K.W. Tate. 2007. Developing Risk Models of Cryptosporidium Transport in Soils from Vegetated, Tilted Soil Box Experiments. J. Environmental Quality. 37:245-258.

Miller, W.A.,  D.J. Lewis, M. Lennox, M.G.C. Pereira, K.W. Tate, P.A. Conrad, and E.R. Atwill. 2007. Climate and On-farm Risk Factors Associated with Giardia duodenalis cysts in Storm Runoff from California Coastal Dairies. Applied and Environmental Microbiology. 73:6972-6979.

Linquist, B.A., K. Trösch, S. Pandey, K. Phouynyavong, and D. Guenat. 2007. Montane paddy rice: its development and effects on food security and livelihood activities of highland Lao farmers. Mountain Research and Development 27:40-47.

Linquist, B.A., Phengsouvanna V. and Sengxue P. 2007. Benefits of organic residues and chemical fertilizer to productivity of rain-fed lowland rice and to soil nutrient balances. Nutrient Cycling in Agroecosystems 79:59-72.

Sipaseuth, J. Basnayake, S. Fukai, T.C. Farrell, M. Senthonghae, Sengkeo, S. Phamixay, B. Linquist and M. Chanphengsay. 2007. Opportunities to increase dry season rice productivity in low temperature affected areas. Field Crops Research 102:87-97.

Saito, K., G.N. Atlin, B. Linquist, K. Phanthaboon , T. Shiraiwa, T. Horie. 2007. Performance of traditional and improved upland rice cultivars under non-fertilized and fertilized conditions in northern Laos. Crop Science 47:2473-2481.

Park, I.M., A.M. Ibanez, F. Zhong, and C.F. Shoemaker. 2007. Gelatinization and pasting properties of waxy and non-waxy rice starches. Starch/Strake 59:388-396.

Ibanez, A.M., D.F. Wood, W.H. Yokoyama, I.M. Park, M.A. Tinoco, C.A. Hudson, K.S. McKenzie, and C.F.Shoemaker. 2007. Viscoelastic properties of waxy and non waxy rice flour, their fat and protein free starch, and the microstructure of their cooked kernels. J Agric Food Chem 55:6761-6771.

Selma,  M.V., A.M Ibanez, A. Allende, M. Cantwell, T. Suslow. 2007. Effect of gaseous ozone and hot water on m,icrobial and sensory quality of cantaloupe and potential transference of E.coli 157:H7 during cutting. Food Microbiology vol. 25(1), 162-168.

Zak, D. R., W. E. Holmes, K. S. Pregitzer, J. S. King, D. S. Ellsworth, and M. E. Kubiske. 2007. Elevated CO2 and O3 alters competition for soil nutrients among temperate forest trees. Global Change Biology 13:2230-2238.

Haefele SM, Nivong, S, Sengxua P, Phengsouvanna V, Vongsouthi S, Linquist B. 2006. Soil fertility management for sustainable and increased rice productivity in the lowland environments of Laos. In Rice in Laos. (Eds) Schiller, J.M., Chanphengxay, M.B., Linquist, B.A. and Appa Rao, S. International Rice Research Institute (IRRI) and Australian Center for International Agricultural Development (ACIAR).

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Linquist, B., K. Trösch, K. Phouynyavong, S. Pandey, S. Fukai, J. Basnayake, D. Guenat and L. Douangsavang. 2006. Montane Paddy Rice: Opportunities for Increasing Food Security in the Highlands of Laos. In Rice in Laos. (Eds) Schiller, J.M., Chanphengxay, M.B., Linquist, B.A. and Appa Rao, S. International Rice Research Institute (IRRI) and Australian Center for International Agricultural Development (ACIAR).

Linquist, B., B. Keoboualapha, Sipaseuth, and P. Inthapanya. 2006. Rice production systems of Laos. In Rice in Laos. (Eds) Schiller, J.M., Chanphengxay, M.B., Linquist, B.A. and Appa Rao, S. International Rice Research Institute (IRRI) and Australian Center for International Agricultural Development (ACIAR).

Linquist, B.,  Kazuki, S.,  Keoboualapha, B., Phengchan, S.  Phanthaboon, K. 2006. Improving upland rice based cropping systems in the Lao PDR. In Rice in Laos. (Eds) Schiller, J.M., Chanphengxay, M.B., Linquist, B.A. and Appa Rao, S. International Rice Research Institute (IRRI) and Australian Center for International Agricultural Development (ACIAR).

Saito, K, B. Linquist, G.N. Atlin, K. Phanthaboon , T. Shiraiwa, T. Horie. 2006. Response of traditional and improved upland rice cultivars to N and P fertilizer in northern Laos. Field Crops Research vol. 96(2-3), 216-223.

Saito, K., Linquist, B., Keobualapha, B., Phanthaboon, K, Shiraiwa, T. and Horie, T. 2006. Stylosanthes guianensis as a short-term fallow for improving upland rice productivity in northern Laos. Field Crops Research (Saito, K, Linquist, B, Keobualapha, B and Horie, T.) Farmers’ knowledge of soils in relation to cropping practices: A case study of farmers in upland rice based slash-and-burn systems of northern Laos. Geoderma  vol. 96(2-3), 438-447

Saito, K, Linquist, B., Keobualapha, B, Phanthaboon, K, Shiraiwa, T. and Horie, T. 2006. Cropping intensity and rainfall effects on upland rice yields in northern Laos. Plant and Soil vol. 284(1-2), 175-185.

Cao, T., M.V. McKenry, R.A. Duncan, T.M. DeJong, B.C. Kirkpatrick, and K.A. Shackel. 2006. Influence of ring nematode infestation and calcium, nitrogen, and indoleacetic acid applications on peach susceptibility to Pseudomonas syringae pv. syringae. Phytopath. 96(6):608-615.

Bandeff, J. M., K. S. Pregitzer, W. M. Loya, W. E. Holmes and D. R. Zak. 2006. Overstory community composition and elevated atmospheric CO2 and O3 modify understory biomass production and nitrogen acquisition. Plant and Soil 282: 251-259.

Busch-Harris, J. L., E. Jennings, K. L. Sublette, K. P. Roberts, D. C. White, A. Peacock, G. Davis, D. Ogles, W. E. Holmes, X. Yang, R. Kolhatkar, A. Kolhathar, and D. Beckmann. 2006. Monitoring Subsurface Microbial Ecology and Demonstrating In Situ Biodegradation Potential Using Bio-Sep® Bio-traps. Ecological Chemistry and Engineering 13:349-372.

Zak, D. R., W. E. Holmes, M. J. Tomlinson, K. S. Pregitzer, and A. J. Burton. 2006. Microbial cycling of C and N in northern hardwood forests receiving chronic atmospheric NO3- deposition. Ecosystems 9: 1-13.

Holmes, W. E., D. R. Zak, K. S. Pregitzer, and J. S. King. 2006. Elevated CO2 and O3 alter soil nitrogen transformations beneath trembling aspen, paper birch, and sugar maple. Ecosystems 9:1354-1363.

Hesson, S., D.S. Ahearn, R.A. Dahlgren, and K.W. Tate, and W.E. Fleenor. 2006. Water Quality Response to a Pulsed-Flow Event on the Mokelumne River, California. Regulated Rivers. 23:185-200.

Gao, M. Li, G. Potter, D. McCombie W. R. and Carlos F. Quiros. 2006. Comparative analysis of methylthioalkylmalate synthase (MAM) gene family and flanking DNA sequences in Brassica oleracea and A. thaliana. Plant Cell Reports 25:592-98.

Ortega, OR, Kliebenstein D, Arbizu C, Ortega R, Quiros CF. 2006. Glucosinolate survey of cultivated and feral mashua in the Cuzco region of Peru. Econ. Bot. 60:254-264.

Pernice, F., L. Solari and T.M. DeJong. 2006. Comparison of growth potentials of epicormic shoots of nectarine trees grown on size-controlling and vigorous rootstocks. Hort. Sci. and Biotechnology 81:211-218.

McAbee, J. M., Hill, T.A., Skinner, D.J., Itzaki, A., Hauser, B.A., Meister, R.J., Reddy G.V., Meyerowitz, E.M., Bowman, J. L., and Gasser, C.G. 2006. ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments. Plant Journal 46:  522-531.

Hill, T.A., Broadvest, J., Kuzoff, R. K. and Gasser, C.G. 2006. Arabidopsis SHORT INTEGUMENTS 2 Is a Mitochodrial DAR GTPase. Genetics 174:  707-718.

Solari, L.I., F. Pernice and T.M. DeJong. 2006. The relationship of hydraulic conductance to root system characteristics of peach (Prunus persica) rootstocks. Physologia Plantarum, vol. 128, pp. 324-333.

Grubb, C.D. and S. Abel. 2006. Glucosinolate metabolism and its control. Trends Plant Sci. 11:89-100.

Makarova, K., A. Slesarev, Y. Wolf, A. Sorokin, B. Mirkin, E. Koonin, A. Pavlov, N. Pavlova, V. Karamychev, N. Polouchine, V. Shakhova, I. Grigoriev, Y. Lou, D. Rohksar, S. Lucas, K. Huang, D.M. Goodstein, T. Hawkins, V. Plengvidhya, D. Welker, J. Hughes, Y. Goh, A. Benson, K. Baldwin, J.H. Lee, I. Diaz-Muniz, B. Dosti, V. Smeianov, W. Wechter, R. Barabote, G. Lorca, E. Altermann, R. Barrangou, B. Ganesan, Y. Xie, H. Rawsthorne, D. Tamir, C. Parker, F. Breidt, J. Broadbent, R. Hutkins, D. O'Sullivan, J. Steele, G. Unlu, M. Saier, T. Klaenhammer, P. Richardson, S. Kozyavkin, B. Weimer and D. Mills. 2006. Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci USA 103:15611-15616.

Atwill, E.R., K.W. Tate, M. Das Gracas C. Pereira, J.W. Bartolome, G.A. Nader. 2006. Efficacy of Natural Grassland Buffers for Removal of Cryptosporidium parvum in Rangeland Runoff. J. Food Protection. 69:177-184.

Minuto, A., M.L. Gullino, F. Lamberti, T.D’Addabbo, E. Tescari, H. Ajwa, and A. Garialdi. 2006. Application of an emulsifiable mixture of 1,3-dichloropropene and chloropicrin against root knot nematodes and soilborne fungi for greenhouse tomatoes in Italy. Crop Protection 25:1244-1252.

Huo N, G. R. Lazo, J.Vogel, D. Coleman-Derr, M.-C. Luo, R. Thilmony, D. Garvin, O. D. Anderson, Y. Q. Gu. 2006. Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics. Genome 49:1099-1108.

Dvorak J, K. R. Deal, and M.-C. Luo. 2006. Discovery and Mapping of Wheat Ph1 Suppressors. Genetics 174:17-27.

Solomeshch, A.I. and M.G. Barbour. 2006. Defining restoration targets for the Great Valley Grassland State Park (San Joaquin Valley). Grasslands Vol. XVI, No. 2, pp. 12-17.

Solomeshch, A.I., Holland, R.F., and M.G. Barbour. 2006. Chapter 15. Vernal pools. In: Barbour, M.G. et al. (ed.), Terrestrial vegetation of California, 3rd ed., UC Press, Berkeley, CA.

Islam, M.D., W.W. Wallender, Mitchell, J.P., S. Wicks, R. E. Howitt. 2006. Performance evaluation of methods for the estimation of soil hydraulic parameters and their suitability in a hydrologic model. Geoderma 134(2006):135-151.

George, MR and MF Alonso. 2006. Oak woodland vegetation dynamics:  a state and transition approach. Merenlender, A. and G. Giusti (technical coordinators). 2006. Proceedings of the Sixth Symposium on Oak Woodlands: Today's Challenges, Tomorrow's Opportunities.  October 9-12, 2006; Rohnert Park, CA.

Polito, V.S., K. Pinney, M. Aradhya, Y. Vaknin, J. Dangl, S. Weinbaum, and J. Grant. 2006. Walnut pollination dynamics: Pollen flow in walnut orchards. Acta Horticulture. 705: 85-94.

Roel, A., G.S. Pettygrove, and Plant, R.E.. 2006. Site-specific rice management. Handbook of Precision Agriculture, Principles and Applications. A. Srivivasan, ed. Haworth Press, New York, NY, 319-340.

Islam, M.D. Nazrul, Wesley W. Wallender, Mitchell, J.P., Santhi Wicks, and Richard E. Howiit. 2006. A comprehensive experimental study with mathematical modeling to investigate the affects of cropping practices on water balance variables. Agricultural Water Management, vol. 82(1-2):129-147.

Veenstra, Jessica J., William R. Horwath, Mitchell, J.P., and Daniel Munk. 2006. Conservation tillage and cover cropping improve soil properties in the San Joaquin Valley. California Agriculture, vol 60(3): 146-153.

Powlson, D., and C. Van Kessel. 2006. Blue baby links. New Scientist, 189: (2538) 24.

Holmes, KA., K.E. Veblen, Young, T.P. and Berry, A.M. . 2006. California oaks and fire: a review and case study. Proceedings of the Sixth Symposium on Oak Woodlands: Today's Challenges, Tomorrow's Opportunities, October 9-12, Rohnert Park, CA, USDA Forest Service General Technical Report PSW-GTR-217. Albany, Ca: Pacific Southwest Research Station, Forest Service, U.S. Dept of Agriculture.

Katz E., Fon M., Nakano, R., Phinney B. S, Sadka A. and Blumwald E. 2006. The citrus fruit proteome: insights into citrus fruit metabolism. Planta: 226(4): 989-1005.

Nakano, R., Sadka, A., Fon, M., Fu, L. & Blumwald, E. 2006. Posttranslational regulation of vacuolar invertase activity in juice sac cells of orange fruit. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.

Schlizerman, L., Marsh, K., Blumwald, E. and Sadka, A. 2006. Iron limitation induces citric acid accumulation and reduces cytosolic aconitase activity in citrus. Physiol Plantarum 131, 72-79.

Sottosanto, JB; Saranga, Y., Blumwald, E. 2006. Impact of AtNHX1, a vacuolar Na+/H+ antiporter, upon gene expression during short- and long- term salt stress in Arabidopsis thaliana. BMC Plant Biol.: 7: 18.

Fitzpatrick, S., P. Reisen, and L. R. Teuber. 2006. Roundup Ready trait purity. In  C. C. Fox, R. Berbert, F. A. Gray, C. R. Grau, D. L. Jessen, and M. A. Peterson (ed.)  Standard Tests to Characterize Alfalfa Cultivars.  3rd ed.  North American Alfalfa Improvement Conference. http://www.naaic.org/stdtests/RoundUpReady.pdf.

Thompson, L.C., L. Forero, Y. Sado, and K.W. Tate. 2006. Assessing the Distribution of Fish in Rangeland Streams in Relation to Environmental Factors: Fish Habitat Use in Cow Creek. California Agriculture. 60:200-206.

Tate, K.W., E.R. Atwill, J.W. Bartolome, and G.A. Nader. 2006. Significant E. coli Attenuation by Vegetative Buffers on Annual Grasslands. J. Environmental Quality. 35:795-805.

D.J. Lewis, M.J. Singer, R.A. Dahlgren, and K.W. Tate. 2006. Nitrate and Sediment Fluxes from a California Rangeland Watershed. J. Environmental Quality. 35:2202-2211.

Mahhou, A., T.M. DeJong, K.S. Shackel and T. Cao. 2006. Water stress and crop load effects on yield and fruit quality of Elegant Lady peach [Prunus persica (L.) Batsch]. Fruits 61:407-418.

Bloom, A.J.. 2006. Chapter 5 - Mineral Nutrition. Taiz L, Zeiger E (eds)  Plant Physiology, 4th Edition.  Sinauer Assoc., Sunderland, MA.

Bloom, A.J.. 2006. Chapter 12 - Assimilation of Mineral Nutrients. Taiz L, Zeiger E (eds)  Plant Physiology, 4th Edition.  Sinauer Assoc., Sunderland, MA.

Bloom, A.J., Frensch J, Taylor AR. 2006. Influence of inorganic nitrogen and pH on the elongation of maize seminal roots. Annals of Botany 97:867-873.

Bloom, A.J.. 2006. Rising carbon dioxide concentrations and the future of crop production. Journal of the Science of Food and Agriculture 86:1289-1291.

Rost TL, Bloom, A.J.. 2006. Root structure and function. Annals of Botany 97:837-838.

Gepts P. 2006. Plant genetic resources conservation and utilization: the accomplishments and future of a societal insurance policy. Crop Sci 46:2278–2292. http://dx.doi.org/10.2135/cropsci2006.03.0169gas.

Feleke Y, Pasquet RS, Gepts P. 2006. Development of PCR-based chloroplast DNA markers to assess gene flow between wild and domesticated cowpea (Vigna unguiculata). Plant Systematics and Evolution 262: 75–87 http://dx.doi.org/10.1007/s00606-006-0475-0.

D.L. Corwin, S.M. Lesch, J.D. Oster and S.R. Kaffka. 2006. Monitoring management-induced spatio–temporal changes in soil quality through soil sampling directed by apparent electrical conductivity. Geoderma, 131 (3/4)369-387.

Wintermantel, W. M., and Kaffka, S.R. 2006. Sugar beet performance with curly top is related to virus accumulation and age at infection. Plant Disease 90:657-662.

Allen, M., T. DeJong, and P. Prusinkiewicz. 2006. L-PEACH, an L-Systems based model for simulating the architecture and carbon partitioning of growing fruit trees. Acta Hort. 707:71-76.

Hill, J.E., JF Williams, RG Mutters and CA Greer. 2006. The California rice cropping system: agronomic and natural resource issues for long-term sustainability. PWE 4:1. 13-19.

McKenzie, KS, CW Johnson, F Jodari, JJ Oster, Hill, J.E., RG Mutters, CA Greer, WM Canevari and K Takami. 2006. Registration of ‘Calamylow-201’ Rice. Crop Sci; 46:2321-2322.

Peace, C.P., Crisosto, C.H., D.T. Garner, A.M. Dandekar, T.M. Gradziel, and F.A. Bliss. 2006. Genetic control of internal breakdown in peach. Acta Horticulturae 713:489-496.

Linquist, BA, SM Brouder and Hill, J.E.. 2006. Winter straw and water management effects on soil nitrogen dynamics in California rice systems. Agron J. 98: 1050-1059.

Ahmad, R., M. Okada, J.L. Firestone, C.R. Mallek, and M. Jasieniuk. 2006. Isolation, Characterization, and Evaluation of Microsatellite Loci for Cultivar Identification in the Ornamental Pampas Grass Cortaderia selloana. J. Amer. Soc. Hort. Sci. 131:499-505.

Gepts P, Hancock J. 2006. The future of plant breeding. Crop Sci 46: 1630-1634 http://dx.doi.org/10.2135/cropsci2005-12-0497op.

Van Deynze A, and Stoffel K. 2006. High throughput DNA extraction from seeds. Seed Science and Technology 34:741-745.

Abdallah, I., A.J. Fischer, C.L Elmore, M. E.Saltveit, and M. Zaki. 2006. Mechanism of Resistance to Quinclorac in Smooth Crabgrass (Digitaria ischaemum). Pesticide Biochemistry and Physiology 84:38-48.

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Aradhya, M. K., D. Potter, and C.J. Simon. 2006. Origin, evolution, and biogeography of Juglans: a phylogenetic perspective. Acta Hort. (ISHS) 705:85-94.

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Van Groenigen, K.J., M.A. de Graaff, Six, J.W., Harris, D., P. Kuikman, C. Van Kessel. 2006. The Impact of Elevated Atmospheric [CO2] on Soil C and N Dynamics: A Meta-Analysis. In: Ecological Studies, vol. 187, pp. 373-392 "Managed Ecosystems and CO2 Case Studies, Processes, and Perspectives" eds.: J. Nösberger, S.P. Long, R.J. Norby, M. Stitt, G.R. Hendrey, H. Blum. © Springer-Verlag Berlin Heidelberg.

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De Gryze, R., Six, J.W., and R. Merckx. 2006. Quantifying water-stable soil aggregate turnover and its implication to soil organic matter dynamics in a model study. European Journal of Soil Science 57:693-707.

C. Van Kessel, B. Boots, M.A. De Graaff, D. Harris, H. Blum, and Six, J.W.. 2006. Total soil C and N sequestration in a grassland following 10 years of free air CO2 enrichment. Global Change Bioliogy 12:2187-2199.

De Graaff, M.A., K.J. van Groenigen, Six, J.W., B.A. Hungate, and C. Van Kessel. 2006. Interactions between plant growth and soil nutrient cycling under elevated CO2: a meta-analysis. Global Change Bioliogy 12:2077-2091.

Denef, K., and Six, J.W.. 2006. Contributions of incorporated residue and living roots to aggregate-associated and microbial carbon in two soils with different clay mineralogy. European Journal of Soil Science, 57, 774-786.

Bossuyt, H., Six, J.W., and P.F. Hendrix. 2006. Interactive effects of functionally different earthworm species on aggregation and incorporation and decomposition of newly added residue carbon. Geoderma 130:14-25.

Pfeiffer, J.M, Dun, S., Mulawarman, B., and Rice, K.J.. 2006. Biocultural diversity in traditional rice-based agroecosystems: indigenous research and conservation of mavo (Oryza sativa L.) upland rice landraces of eastern Indonesia. Environment, Development and Sustainability.  Online Version 9/15/06.

Gradziel, Thomas M. and Abhaya Dandekar. 2006. The Development and Characterization of Navel Orangeworm and Aspergillus flavus Resistance in Almond. 2006 Aflatoxin Elimination Workshop, Fort Worth, Texas.  1 p.

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Oscar, O.R., Kliebenstein, D.J., Arbizu, C., Ortega, R. And C.F. Quiros. 2006. Glucosinolate survey in cultivated and feral mashua (Tropaeolum tuberosum Ruiz & Pavon). Journal of Economic Botany vol 60(3):254-264.

Kliebenstein, D.J. 2006. Metabolomics and plant quantitative trait locus analysis – The optimum genetical genomics platform. In Concepts in Plant Metabolomics, B.J. Nikolau and E.S. Wurtele, eds (Dordrect, The Netherlands: Springer), pp.29-45.

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Reid, M.S.. 2006. Air transport of cut flowers. In: Perishable Cargo Manual,  6th Edition, International Air Transport Association,  pp. 175-186.

Eviner, VT, FS Chapin III, CE Vaughn. 2006. Seasonal variations in plant species effects on soil N and P dynamics. Ecology. 87: 974-986.

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Ferrante, A, and Reid, M.S.. 2006. Fisiologia postraccolta dei fiori recisi : Postharvest physiology of cut flowers review. Italus Hortus 13 (4), 24-36.

Bradford, K.J., Alston, J.M., and Kalaitzandonakes, N. 2006. Regulation of biotechnology for specialty crops. Just, R., Alston, J.M., and Zilberman, D., eds., Regulating Agricultural Biotechnology: Economics and Policy, Springer Publishers, New York, pp. 683-697.

Bradford, K.J.. 2006. Seed biotechnology: Translating promise into practice. S. Navie, S. Adkins, and S. Ashmore, eds., Seeds: Biology, Development and Ecology, CAB International, Wallingford, U.K., pp. 130-138.

Bradford, K.J.. 2006. Methods to maintain genetic purity of seed stocks. University of California, Division of Agriculture and Natural Resources, Publication 8189. http://anrcatalog.ucdavis.edu.

Alston, J.M., Bradford, K.J., and Kalaitzandonakes, N. 2006. The economics of horticultural biotechnology. J. Crop Improvement 18: 413-431.

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Davis, K., Z. Heath, H.J. Burrack, F.G. Zalom, and L. Ferguson. 2006. A probability model for olive fruit fly (Bactrocera oleae) damage in California Mission and Manzanillo olives. Olivebioteq 2006,     Second International Seminar, Recent Advances in Olive Industry, November 5-10, 2006, Marsala, Mazara del Vallo, Italy, 4 pp.

Ferguson, Louise. 2006. California pistachio industry. FAO-CIHEAM Nucis Newsletter, No. 13, December 2006, pp. 31-36.

Ferguson, Louise. 2006. Trends in olive fruit handling previous to its industrial transformation. International Journal of Fats and Oils, Grasas y Aceites 57(1) 7 pp.

Lovatt, Carol J., Hassania Daoudi, and Louise Ferguson. 2006. Efficacy of foliar-applied cytokinins and nitrogen to increase floral bud retention and to reduce alternate bearing of pistachio. Proc. Xth IS on Plant Bioregulators in Fruit, (eds.) A.D. Webster and H. Ramirez.  Acta Horticulturae 727:353-364.

Wang L., T.Z. Ren, Y.C. Wang, S. Geng, and L. Ji. 2006. Effect of seaweed extract on nitrogen cycling for Beijing zoo water. Chinese Journal of Environmental Science and Technology 29(2):14-16.

Ding, T.-S., H.-W. Yuan, S. Geng, C.-N. Koh, and P.-F. Lee. 2006. Macro-scale bird species richness patterns of the East Asian mainland and islands: energy, area and isolation. Journal of Biogeography 33:683-693. (SCI, IF = 2.804, top 10%).

Hua, S.S.T.,.D. E. Parfitt, B. A. Holtz. 2006. Evaluation of a biopesticide, Pichia anomala WRL-076 to control Aspergillus flavus in a commercial orchard. Proceedings of the California Conference of Biological Control,  July, 25-28, 2006 Riverside, CA p.152-155.

Kami J, Poncet V, Geffroy V, Gepts P. 2006. Development of four phylogenetically-arrayed BAC libraries and sequence of the APA locus in Phaseolus vulgaris. Theor. Appl. Genet. 112: 987-998. http://dx.doi.org/10.1007/s00122-005-0201-2.

Martínez Castillo J, Zizumbo-Villarreal D, Gepts P, Delgado-Valerio P, and Colunga-GarcíaMarín P. 2006. Structure and genetic diversity of wild populations of Lima bean (Phaseolus lunatus L.) from the Yucatan Peninsula, Mexico. Crop Sci 46: 1071-1080 http://dx.doi.org/10.2135/cropsci2005.05-0081.

Cleveland DA, Soleri D, Aragón Cuevas F, Crossa JL, and Gepts P. 2006. Detecting (trans)gene flow to landraces in centers of crop origin: lessons from the case of maize in Mexico. Environmental Biosafety Research 4: 197–208.

Meimberg, H., Hammond, J.I., Jorgensen, C., Park, T.W., Gerlach, J.D., Rice, K.J., and J.K. McKay. 2006. Molecular evidence for an extreme genetic bottleneck during the introduction of barbed goatgrass, Aegilops triuncialis, to California. Biological Invasions. Online Version 6/15/06.

Baldwin, A.J., and K. Inoue. 2006. The most C-terminal tri-glycine segment within the polyglycine stretch of the pea Toc75 transit peptide plays a critical role for targeting the protein to the chloroplast outer envelope membrane. FEBS Journal 273:1547-1555.

Yoder, J.I. and Musselman, L.J. 2006. Striga: a subterranian parasitic angiosperm (witchweed). Goodman, R. ed. Encyclopedia of Plant and Crop Science, Taylor and Francis Group, New York.

Solari, L.I., Johnson, R.S. and T.M. DeJong. 2006. Relationship of water status to vegetative growth and leaf gas exchange of peach (Prunus persica) trees on different rootstocks. Tree Physiology 26:1333-1341.

De Gryze, S., L. Jassogne, Six, J.W., H. Bossuyt, S. Herman, M. Wevers, and R. Merckx. 2006. Pore structure changes during decomposition of fresh residue: X-ray tomography analyses. Geoderma, 134:82-96.

Mummey, D.L., Rillig, C.R., and Six, J.W.. 2006. Endogeic earthworm differentially influence bacterial communities associated with different soil aggregate size fractions. Soil Biol. Biochem. 38:1608-1614.

Cavagnaro, T.R., L.E. Jackson, Six, J.W., H. Ferris, S. Goyal, D. Asami, and K.M. Scow. 2006. Arbuscular mycorrhizas, microbial communities, nutrient availability, and soil aggregates in organic tomato production. Plant Soil 282:209-225.

Plante, A.F., R.T. Conant, E.A. Paul, K. Paustian, and Six, J.W.. 2006. Acid hydrolysis of easily dispersed and microaggregate-derived silt- and clay-sized fractions to isolate resistant soil organic matter. Soil. Sci., 57:456-467.

Mummey, D.L., W.E. Holben, Six, J.W., and P.D. Stahl. 2006. Spatial stratification of soil microbial populations in diverse soils: Rubrobacteria and Gemmatimonads are abundant in water-stable microaggregate interiors while Acidobacteria are primarily associated with macroaggregates. Micr. Ecol., 51:404-411.

Van Groenigen, K.J., Six, J.W., B.A. Hungate, M.A. de Graaff, N. van Breemen, and C. Van Kessel. 2006. Element interactions limit soil C storage. Proc. Nat. Acad. Sci., 103:6571-6574.

Lee, J., Six, J.W., A.P. King, C. Van Kessel, and D.E. Rolston. 2006. Tillage and field-scale controls on greenhouse gas emissions. Environ. Qual., 35: 714-725.

De Gryze, S., L. Jassogne, H. Bossuyt, Six, J.W., and R. Merckx. 2006. Water repellence and soil aggregate dynamics in a loamy grassland soil as affected by texture. Soil Sci. 57:235-246.

Thiet, R.K., S.D. Frey, and Six, J.W.. 2006. Do growth yield efficiencies differ between soil microbial communities differing in fungal:bacterial ratios? Reality check and methodological issues. Soil Biol. Biochem. 38:837-844.

Phillips, D.A., T.C. Fox, and Six, J.W.. 2006. Root exudation (net efflux of amino acids) may increase rhizodeposition under elevated CO2. Global Change Biol., 12:561-567.

Six, J.W., S.D. Frey, R.K. Thiet, and K.M. Batten. 2006. Bacterial and fungal contributions to C-sequestration in agroecosystems. Soil Sci. Soc. Am. J. 70:555-569.

Plante, A.F., C.E. Stewart, R.T. Conant, K. Paustian, and Six, J.W.. 2006. Soil management effects on organic carbon storage in fractions physically isolated from a Gray Luvisol soil. Soil Sci. 86:141-151.

Poch, R.M., J.W. Hopmans, Six, J.W., D.E. Rolston, and J.L. McIntyre. 2006. Considerations of a field scale soil carbon budget for furrow irrigation. Agric. Ecosys. Environ. 113:391-398.

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Bossuyt, H., Six, J.W., and P.F. Hendrix. 2006. Interactive effects of functionally different earthworm species on aggregation and incorporation and decomposition of newly added residue carbon. Geoderma, 130:14-25.

McHale, L., Tan, X., Koehl, P., Michelmore, R.W. 2006. Plant NBS-LRR proteins: adaptable guards. Genome Biology  7:212.

Kuang, H., Ochoa, O.E., Nevo, E., Michelmore, R.W. 2006. The disease resistance gene Dm3 is infrequent in natural populations of Lactuca serriola due to deletions and frequent gene conversions. Plant Journal 47:38-48.

Bushman, B.S., Scholte, A.A., Cornish, K., Scott, D.J., Brichta, J.L., Vederas, J.C., Ochoa, O., Michelmore, R.W., Shintani, D., Knapp, S.J. 2006. Identification and characterization of natural rubber from two Lactuca species. Phytochemistry 67:2590-2596.

Timms, L., Jimenez, R., Chase, M., Lavelle, D., McHale, L., Kozik, A., Lai, Z., Heesacker, A., Knapp, S., Rieseberg, L., Michelmore, R., Kesseli, R. 2006. Analyses of synteny between Arabidopsis thaliana and species in the Asteraceae reveal a complex network of small syntenic segments and major chromosomal rearrangements. Genetics 173:2227-35.

Monzon, M.E., Biasi, and E.J. Mitcham. 2006. Effect of radiofrequency heating on the quality of ‘Fuyu’ persimmon fruit as a treatment for control of the Mexican fruit fly. HortScience 41(7)1-5.

Mitcham, E.J. 2006. Innovations in Quarantine, p.113-131. In:  S. Ben-Yehoshua (Ed), Environmentally Friendly Technologies for Agricultural Produce Quality. Taylor & Francis Group, Boca Raton.

Raviv, M., S. Medina, and J.H. Lieth. 2006. Calorespirometry: a Novel Approach to Predicting Energy Requirements of Greenhouse Flower crops. International Cut Flower Growers Bulletin Jan 2006.

Lieth, J.H. 2006. Final Report on the Rose Cut-flower modeling work. International Cut Flower Growers Bulletin Jan 2006.

Raviv, M. and J.H. Lieth. 2006. Calorespirometry: a Novel Approach to Predicting Energy Requirements of Greenhouse Flower crops. International Cut Flower Growers Bulletin Aug 2006.

Lieth, J.H. 2006. Development of protocols for optimization of branching and flower counts in cut-flower gerbera production. International Cut Flower Growers Bulletin Aug 2006.

Mitcham, Elizabeth. 2006. Stopping the land grant brain drain. Postharvest Column, American/Western Fruit Grower, June 2006, p. 45.

Mitcham, Elizabeth. 2006. Flavor is the key to increased consumption. Postharvest Column, Summerfruit Australia Quarterly, December 2006.

Ledig, F.T., P.D. Hodgskiss, and D.R. Johnson. 2006. The Structure of Genetic diversity in Engelmann spruce and a comparison with blue spruce. Canadian Journal of Botany: 84: 1806-1828.

Young, T.P.. 2006. Declining rural economies and the future of biodiversity: missing the forest for the trees?. Journal of International Wildlife Law and Policy 9:319-334.

Parfitt, Dan E.,  Joseph Marantod, Craig E.Kallsend. 2006. 'Randy' male pistachio. United States Patent Application Docket No. # 20060212979.

Whittall, J.B., Voelckel, C., Kliebenstein, D.J. and S.A. Hodges. 2006. Convergence, constraint and the role of regulatory genes during adaptive radiation: Floral anthocyanins in Aquilegia. Molecular Ecology;15(14):4645-57.

Putnam, D.H. 2006. Methods to Enable the Co-Existence of Diverse Alfalfa Production Systems. Peer-reviewed on-line Publication 8193.  University of California Division of Agriculture and Natural Resources.  http://anrcatalog.ucdavis.edu.

Putnam, D.H. and T. Del Curto. 2006. Forage Systems for Arid Zones. Forages – The Science of Grassland Agriculture (peer-reivewed Book Chapter).  K. Moore, J. Nelson, M. Collins (eds.).  Iowa State University Press.  Chapter 22..

Bradford, K.J.. 2006. Germination (molecular aspects, physical factors, radicle emergence). Bewley, J.D., Black, M., and Halmer, P., eds., The Encyclopedia of Seeds: Science, Technology and Uses. CABI Publishing, Wallingford, UK, pp. 280-287.

Kalaitzandonakes, N., Alston, J.M., and Bradford, K.J.. 2006. Compliance costs for regulatory approval of new biotech crops. Just, R., Alston, J.M., and Zilberman, D., eds., Regulating Agricultural Biotechnology: Economics and Policy, Springer Publishers, New York, pp. 37-57.

Kyser, G.B., J.M. DiTomaso, M.P. Doran, S.B. Orloff, R.G. Wilson, D. Lancaster, D. Lile, and M. Porath. 2006. Control of medusahead (Taeniatherum caput-medusae) and other annual grasses with imazapic. Weed Technology Vol 21 (1): 66-75.

Candan, A.P., J. Graell, Crisosto, C.H., and C. Larrigaudiere. 2006. Improvement of storability and shelf-life of ‘Blackamber’ plums treated with 1-methylcyclopropene. Food Sci Tech Int. 15(2)437-444.

Valero, C., Crisosto, C.H., D. Slaughter. 2006. Relationship between nondestructive firmness measurements and commercially important ripening fruit stages for peaches, nectarines and plums. Postharvest Biology and Technology 44:248-253.

Hartz, T.K. and P.R. Johnstone. 2006. Nitrogen availability from high-nitrogen-containing organic fertilizers. HortTechnology 16:39-42.

J.D. Williamson, C.P. Peace, F.A. Bliss, D.T. Garner, and Crisosto, C.H.. 2006. Evidence for a single locus controlling flesh color, senescent leaf color, and hypanthium color in peach. Journal of the American Society of Horticultural Science. 131(2):256-260.

Palou, L., Crisosto, C.H., D. Garner. 2006. Combination of Postharvest antifungal chemical treatments and controlled atmosphere storage to control gray mold and improve storability of ‘Wonderful’ pomegranates. Postharvest biology and Technology 43:133-142.

Brown, Patrick H.. 2006. Estrategias de fertilización y fertirrigación en frutales y frutos secos. Aplicación y efectos. In:  Lleida Fruit, Simposio Internacional de Nutrición Vegetal. Septiembre/Octubre 2006.

Crisosto, C.H.. 2006. Editor. Central Valley Postharvest Newsletter 15(1):1-8.

Crisosto, C.H.. 2006. Peach market life – should we apply this concept?. Central Valley Postharvest Newsletter 15(1):1-7.

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Crisosto, C.H.. 2006. Editor. Central Valley Postharvest Newsletter 15(3):1-16.

Crisosto, C.H., P. Corzo, L. Palou, and F.G. Mitchell. 2006. Table grape packaging influences ‘Flame Seedless’ and ‘Redglobe’ storage quality – 1999 season. Central Valley Postharvest Newsletter 15(3):8-15.

Crisosto, C.H.. 2006. Editor. Central Valley Postharvest Newsletter 15(4):1-10.

Adaskaveg, J.E., H. Forster, G. Driever, and Crisosto, C.H.. 2006. Scholar’s mentor gets an emergency registration to help manage sour rot of stone fruit in California. Central Valley Postharvest Newsletter 15(4):2-5.

Crisosto, C.H.. 2006. Manejo poscosecha del melocotón en California. II Congreso Nacional del Sistema Producto Durazno, 17 y 18 de Noviembre del 2006.

Crisosto, C.H.. 2006. Peach quality and postharvest technology. Acta Horticulturae 713: 479-487.

Peace, C. and Crisosto, C.H.. 2006. Revealing the genetic control of internal breakdown in peach. Summerfruit, Australia Quarterly 8(2):20-21.

Crisosto, C.H.. 2006. Come limitare le perdite e prolungare la conservazione delle nettarine in post-raccolta. Frutticoltura e di ortofloricoltura. 68:39-45.

Slaughter, D.C., Crisosto, C.H., J.K. Hasey, and J.F. Thompson. 2006. Comparison of instrumental and Manual inspection of clingstone peaches. American Society of Agricultural and Biological Engineers. 22(6):883-889.

Crisosto, C.H. and C. Valero. 2006. “Ready to eat”: maduración controlada de fruta de hueso en cámara. Horticutura. 29:32-37.

R.P. Haff, D.C. Slaughter, Y. Sarig, and A. Kader. 2006. X-Ray Assessment of Translucency in Pineapple. Journal of Food Processing and Preservation 30: 527–533.

Adel A. Kader. 2006. The Return on Investment in Postharvest Technology for Assuring Quality and Safety of Horticultural Crops. J. Agric. Food Chem. 2006, 4:45-52.

Coates, R.W., M.J. Delwiche, and Brown, Patrick H.. 2006. Design of a system for individual microspinkler control. American Society of Agricultural and Biological Engineers. 49(6):1963-1970.

Tenenbaum, D.E., M.L. Cadenasso, L.E. Band, and S.T.A. Pickett. 2006. Using transects to sample digital orthophotography of urbanizing catchments to provide landscape position descriptions. GIScience & Remote Sensing 43:1–29.

Brown, Patrick H. and T. Rosenstock. 2006. Perspectives on precision farming of tree crops: estimating yields and designing interventions. Acta Hort. 721:139- 145.

Coates, Robert W., Michael J. Delwiche, and Brown, Patrick H.. 2006. Control of individual microsprinklers and fault detection strategies. Precision Agric 7:85-99.

Retamales, J.B., Lobos,G.A., Brown, Patrick H., Fallahi, E., Hipps, N., Neilsen, D., Neilsen, G.H., Peryea, F.J., Swietlik, D., Tagliavini, M. (eds). 2006. Proceedings of the Fifth International Symposium on Mineral Nutrition of Fruit Trees. Acta Horticulturae 721:1-344 .

Yun Jeong Hong, F.A. Tomas-Barberan, Adel A. Kader, and Alyson E. Mitchell. 2006. The Flavonoid Glycosides and Procyanidin Composition of Deglet Noor Dates (Phoenix dactylifera). J. Agric. Food Chem. 2006, 54, 2405-2411.

Antonio Marrero, Adel A. Kader. 2006. Optimal Temperature and Modified Atmosphere for Keeping Quality of Fresh-cut Pineapples. Postharvest Biology and Technology 39: 163–168.

Eduardo V. De B. Vilas- Boas, Adel A. Kader. 2006. Effect of Atmospheric Modification, 1-MCP and Chemicals on Quality of Fresh-cut Banana. Postharvest Biology and Technology 39: 155–162.

E. Aguayo, R. Jansasithorn, A.A. Kader. 2006. Combined Effects of 1-methylcyclopropene, Calcium Chloride Dip, and/or Atmospheric Modification on Quality Changes in Fresh-cut Strawberries. Postharvest Biology and Technology 40: 269–278.

Canevari, M., R. Vargas, S. Wright, and Jackson, L.F.. 2006. Trouble-shooting small grain production. University of California Agriculture and Natural Resources, Publication 8177.

Jackson, L.F., J. Dubcovsky, L.W. Gallagher, O. Chicaiza, D. Stewart, F.T. Maciel, D. Prato-Mayo, P. Mayo, D. Kirby, H. Carlson, M. Canevari, B. Marsh, D. Munier, S. Orloff, J. Schmierer, R.Vargas, and S. Wright. 2006. 2006 Regional barley, common wheat and triticale, and durum wheat performance tests in California. UC Davis Agronomy Progress Report No. 293: 1-52.

Barry, Sheila, Stephanie Larson, and Melvin George. 2006. California native grasslands: a historical perspective, a guide for developing realistic restoration objectives. Grasslands 16:7-11.

Sanchez, E.E., S.A. Weinbaum, R.S. Johnson. 2006. Comparative movement of labeled nitrogen and zinc in 1-year-old peach [Prunus persica (L.) Batsch] trees following late-season foliar application. Journal of Horticultural Science & Biotechnology 81(5): 839-844.

Pickett, S.T.A. and M.L. Cadenasso. 2006. Advancing urban ecological studies: frameworks, concepts, and results from the Baltimore Ecosystem Study. Austral Ecology 31:114-125.

Bregitzer P., D. Fiedler, A.E. Blechl, J. Lin, P. Sebesta, J. Fernandez De Soto, O. Chicaiza, J. Dubcovsky. 2006. Changes in high molecular weight glutenin subunit composition can be genetically engineered without impacting wheat agronomic performance. Crop Sci. 46:1553–1563.

Valárik, M., A. M. Linkiewicz, and J. Dubcovsky. 2006. A microcolinearity study at the earliness per se gene Eps-Am1 region reveals an ancient duplication that preceded the wheat - rice divergence. Theor Appl Genet 112: 945-957.

Distelfeld A., C. Uauy, T. Fahima, and J. Dubcovsky. 2006. Physical map of the wheat high-grain protein content gene Gpc-B1 and development of a high-throughput marker. New Phytologist. 169:753-763.

Miller A. K., G. Galiba, and J. Dubcovsky. 2006. A cluster of eleven CBF transcription factors is located at the frost tolerance locus Fr-Am2 in Triticum monococcum. Mol. Gen. Genomics. 275: 193–203.

Laudencia-Chincuanco, D., Stamova, B., You, F., Lazo, G., Beckles, D., and Anderson, O.D. 2006. Transcriptional profiling of wheat caryopsis development using cDNA microarrays. Plant Mol Biol 63:651–668.

Uauy C., J.C. Brevis, and J. Dubcovsky. 2006. The high grain protein content gene Gpc-B1 accelerates senescence and has pleiotropic effects on protein content in wheat. Journal of Experimental Botany. 57: 2785-2794.

Carrera A., V. Echenique, Zhang, W., M. Helguera, F. Manthey, A. Schrager, A. Picca, G. Cervigni and J. Dubcovsky. 2006. A deletion at the Lpx-B1 locus is associated with low lipoxygenase activity and improved pasta color in durum wheat (Triticum turgidum ssp. durum). Journal of Cereal Science. 45 (1): 67-77.

Bonafede, M., L. Kong, G. Tranquilli, H. Ohm, and J. Dubcovsky. 2006. Reduction of a Triticum monococcum chromosome segment carrying the softness genes Pina and Pinb translocated to bread wheat. Crop Science. 47: 821-826.

Uauy C., A. Distelfeld, T. Fahima, A. Blechl, and J. Dubcovsky. 2006. A NAC gene regulating senescence improves grain protein, Zn, and Fe content in wheat. Science. 314: 1298-1300.

Yan, L., D. Fu, Chengxia Li, A. Blechl, G. Tranquilli, M. Bonafede, A. Sanchez, M. Valarik, and J. Dubcovsky. 2006. The wheat and barley vernalization gene VRN3 is an orthologue of FT. Proc. Natl. Acad. Sci. U.S.A. 103: 19581-19586.

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Chao S., Zhang, W., J. Dubcovsky, and M. Sorrells. 2006. Evaluation of genetic diversity and genome-wide linkage disequilibrium among US wheat (Triticum aestivum L.) germplasm representing different market classes. Crop Science. 47:1018–1030.

Dvorak, J., E.D. Akhunov, A.R. Akhunova, O.D. Anderson, J.A. Anderson, N. Blake, M.T. Clegg, D. Coleman-Derr, E.J. Conley, C.C. Crossman, K.R. Deal, J. Dubcovsky, B.S. Gill, Y.Q. Gu, J. Hadam, H.Y. Heo, N. Huo, G. Lazo, K.E. Lundy, M.C. Luo, Y-Q Ma, D.E. Matthews, P.E. McGuire, P. Morrell, C.O. Qualset, J. Renfro, S. Reynolds, D. Tabanao, L.E. Talbert, C. Tian, D. Toleno, M. Warburton, F.M. You, Zhang, W. 2006. SNPs, high-throughput markers for wheat genetics and breeding. Proc. ITMI meeting, Adelaide, Australia, pp. 24.

Renz, M.J. and J.M. DiTomaso. 2006. Early season mowing improves the effectiveness of chlorsulfuron and glyphosate for control of perennial pepperweed (Lepidium latifolium) with select herbicides. Weed Technology 20(1):32-36.

DiTomaso, J.M., M.L. Brooks, E.B. Allen, R. Minnich, R.M. Rice, and G.B. Kyser. 2006. Control of Invasive Weeds with Prescribed Burning. Weed Technology 20:535-548.

DiTomaso, J.M., G.B. Kyser, J.R. Miller, S. Garcia, R.F. Smith, G. Nader, J.M. Connor, and S.B. Orloff. 2006. Integrating prescribed burning and clopyralid for the management of yellow starthistle (Centaurea solstitialis). Weed Science 54(4):757-782.

DiTomaso, J.M. 2006. Control of invasive plants with prescribed fire. Pages 7-18, In The Use of Fire as a Tool for Controlling Invasive Plants. DiTomaso, J.M. and D.W. Johnson, eds. California Invasive Plant Council, Publ. #2006-01, Berkeley, CA.

DiTomaso, J.M. 2006. Using prescribed burning in integrated strategies. In The Use of Fire as a Tool for Controlling Invasive Plants. DiTomaso, J.M. and D.W. Johnson, eds. California Invasive Plant Council, Publ. #2006-01, Berkeley, CA: Pages 19-28.

DiTomaso, J.M., G.B. Kyser, and M.J. Pitcairn. 2006. Yellow Starthistle Management Guide. Cal-IPC Publication #2006-03. California Invasive Plant Council: Berkeley, CA. 65 pp. Available: www.cal-ipc.org.

DiTomaso, J.M. 2006. New weed alerts!. Cal-IPC News 13(4):4-5.

DiTomaso, J.M. 2006. Emerging invasive weeds and the potential for biological control. Proc., California Conference on Biological Control. 5:40-46.

Bell, C.E., J.M. DiTomaso, and M.L. Brooks. 2006. Wildfires and invasive plants in southern California. Proc., California Weed Science Society 58:40-42.

DiTomaso, J.M. 2006. Invasive weeds from the nursery. Proc., California Weed Science Society 58:83-85.

DiTomaso, J.M. and G.B. Kyser. 2006. Evaluation of imazapyr and aminopyralid for invasive plant management. Proc., California Weed Science Society 58:107-109.

DiTomaso, J.M. and G.B. Kyser. 2006. Future of Forest Chemistry. Proc., Forest Vegetation Management Conference. University of California, Shasta County Cooperative Extension, Redding, California. 27.

Bossard, C., M. Brooks, J. DiTomaso, J. Randall, C. Roye, J. Sigg, A. Stanton, and P. Warner. 2006. California Invasive Plant Inventory. California Invasive Plant Council, Publ. #2006-02. Berkeley, CA. 39 pp.

DiTomaso, J.M. 2006. 2005 Cal-IPC Weed Alerts. Proc. 2005 California Invasive Plant Council Symposium 9:88-89

Dvorak, J., Akhunov, E.D., Akhunov, A.R., Deal, K.R., Luo@ucdavis.edu">Luo, M.C.. 2006. Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat. Mol. Biol. Evol. 23:1386-1396.

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Adaskaveg, J.E. and Crisosto, C.H.. 2006. Sour rot control. Central Valley Postharvest Newsletter 15(2):1-3.

Ritenour, M.A. and Crisosto, C.H.. 2006. Hydrocooler water sanitation in the San Joaquin valley stone fruit industry. Central Valley Postharvest Newsletter 15(2):3-6.

Adaskaveg, J.E., H.C. Forster, and Crisosto, C.H.. 2006. The top ten tips for decay control. Central Valley Postharvest Newsletter 15(2): 6-7.

Mattson, N.S., J.H. Lieth and W.S. Kim. 2006. Modeling the Influence of Cyclical Plant Growth and Nutrient Storage on N, P, and K Absorption by Hydroponically Grown Cut Flower Roses. Acta Horticulturae. 718:445-452.

Galli, J.R., Cangiano, C.A., Pece, M.A., Larripa, M.J., Laca, E.A. 2006. Uso del sonido en el análisis de la tasa de consumo de bovines (Acoustic analysis of intake rate in cattle). Rev. Arg. Prod. Anim. Vol. 26 Sup.1: 165-167.

Dichio, L., Galli, J.R., Cangiano, C.A., Laca, E.A. 2006. Estabilidad del crecimiento de alfalfa y festuca en pasturas sembradas en manchones puros y en mezcla (Stability of growth of alfalfa and fescue seeded in monospecific patches and mixed). Rev. Arg. Prod. Anim. Vol. 26 Sup.1: 164-165.

Guerín, F., Milone, D., Cangiano, C.A., Galli, J.R., Martínez, C. L., Laca, E. 2006. Registro y clasificación de eventos masticatorios de ovinos en pastoreo (Recording and classification of chewing in grazing sheep). 7 Simposio Argentino de Tecnología de Computación, 7:269-279.

Perez-Quezada, J.F., Akshalov, K., Wolf, A., Saliendra, N.Z., Johnson, D.A. Laca, E.A. 2006. Spatial Variability of Carbon and Water Vapor Flux on Wheat and Abandoned Lands Estimated Using Mobile Eddy Covariance Towers, Eos Trans. AGU, 87(52), Fall Meet. Suppl., Abstract B53F-04.

Galli, J.R., Cangiano, C.A., Demment, M.W., Laca, E.A. 2006. Acoustic monitoring of chewing and intake of fresh and dry forages in steers. Elsevier, Animal Feed Sciences and Technology, 128 (2006) 14–30.

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Melvin R. George, Sheila J. Barry, Stephanie R. Larson, Neil K. McDougald, Theresa A. Ward, John M. Harper, Dennis M. Dudley, Roger S. Ingram, and Emilio A. Laca. 2006. Comparison of Comparative Yield and Stubble Height for Estimating Herbage Standing Crop in Annual Rangelands. Rangeland Ecol Manage 59:438–441.

B. K. Wylie, Tagir G. Gilmanov, Douglas A. Johnson, Nicanor Z. Saliendra, Larry L. Tieszen, Ruth Anne F. Doyle, and Emilio A. Laca. 2006. Scaling-up of CO2 Fluxes to Assess Carbon Sequestration in Rangelands of Central Asia. USDA Forest Service Proceedings RMRS-P-39: 111-119.

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Thorne, Eleanor T., J.F. Stevenson, T.L. Rost, J.M. Labavitch, and M.A. Matthews. 2006. Pierce’s Disease Symptoms: Comparison with symptoms of water deficit and the impact of water deficits. American Journal of Viticulture and Enology 57:1-11.

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Solomeshch A.I., S.N. Long, M.G. Barbour, and Berry, A.M.. 2006. Floristic Composition of Roadside Grasslands, Yolo County, California. T. Van Devender (Ed.), Proceedings, Weeds Across Borders 2006, Hermosillo, Mexico, University of Arizona Press.

Busi, R., F. Vidotto, A.J. Fischer, M.D. Osuna, R. De Prado, and A. Ferrero. 2006. Patterns of Resistance to ALS herbicides in Smallflower Umbrella Sedge (Cyperus difformis) and Ricefield Bulrush (Schoenoplectus mucronatus). Weed Technology 20:1004-1014.

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Pérez de Vida, F.B., E.A. Laca, D.J. Mackill, G.M. Fernández, A.J. Fischer. 2006. Relating rice traits to weed competitiveness and yield: a path analysis. Weed Science 54:1122-1131.

G. Getachew, S-H. Kim, B.J. Burri, P.B. Kelly, K.W. Haack, T.J. Ognibene, B.A. Buchholz, J.S. Vogel, J. Modrow, and A.J. Clifford. 2006. How to convert biological carbon into graphite for AMS. Journal of Radiocarbon 48(3):325-336.

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Kliebenstein, D.J. 2006. Secondary metabolites and plant/environment interactions: a view through Arabidopsis thaliana tinged glasses. Plant Cell and Environment 27(6):675-684.

Berry, A.M., K. Benouar, S.L. Jacobson. C. Poe and V. Claassen. 2006. Tools and processes for implementing a road ecology approach to transportation planning and the environment. J. Ecotechnology (2):  31-47.

Sahi, C., Singh, A., Blumwald, E. & Grover, A. 2006. Beyond osmolytes and transporters:novel plant stress tolerance-related genes from transcriptional profiling data. Physiologia Plantarum 127:1-9.

Shimada, T., Nakano, R., Shulaev, V., Sadka, A. and Blumwald, E. 2006. Vacuolar citrate/H+ symporter of citrus juice cells. Planta 224:472-480.

Sahi, C., Singh, A., Kumar, K., Blumwald, E. & Grover, A. 2006. Salt stress response in rice: genetics, molecular biology and comparative genomics. Functional & Integrative Genomics 6:263-284.

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Deguchi M., Bennett, A.B., Yamaki S., Yamada K., Kahahama K., Kanayama Y. 2006. An engineered sorbitol cycle alters sugar composition, not growth, in transformed tobacco. Plant Cell Envir.  29:1980-1988.

Boettiger S., Bennett, A.B.. 2006. The Bayh-Dole Act: Implications for developing countries. IDEA 46:259-279.

Alan B. Bennett, Cecilia Chi-Ham, Sara Boettiger, David Tricoli, and Tamara Holst. 2006. Enabling Technologies for Grape Transformation. Pierce’s Disease Control Program Research Symposium, November 27-29, 2006 San Diego, California.

Josef Geoola, Cecilia Chi-Ham, Sara Boettiger, Alan B. Bennett. 2006. Management of intellectual property within the Pierce’s disease research initiative and research community. Pierce’s Disease Control Program Research Symposium, November 27-29, 2006 San Diego, California.

Crisosto, C.H., Crisosto, G.M. and F. Neri. 2006. Understanding tree fruit quality based on consumer acceptance. Acta Horticulturae 712: 183-189.

Hansen, B.G., Sønderby, I.E., Kliebenstein, D.J., and B.A. Halkier. 2006. Polypeptides and nucleic acids involved in glucosinolate biosynthesis. US Patent Office.

Boettiger S., Bennett, A.B.. 2006. Bayh-Dole: If we knew then what we know now. Nature Biotech. 24:320-324.

Teo, Gianni, Yasuo Suzuki, Sandie L. Uratsu, Bruce Lampinen, Nichole Ormonde, William K. Hu, Ted M. DeJong, and Abhaya M. Dandekar. 2006. Silencing leaf sorbitol synthesis alters long-distance partitioning and apple fruit quality. PNAS 103(49):18842-18847.

Rosati, A., S.G. Metcalf, R.P. Buchner, A.E. Fulton, and B.D. Lampinen. 2006. Physiological effects of Kaolin applications in well-irrigated and water-stressed walnut and almond trees. Annals of Botany 98:267-275.

Rosati, A., S. Metcalf, R. Buchner, A. Fulton, and B. Lampinen. 2006. Tree water status and gas exchange in walnut under drought, high temperature and vapour pressure deficit. Journal of Horticultural Science & Biotechnology 81(3):415-420.

Lampinen, B., G. Browne, S. Schneider, A. Shrestha, B. Holtz and L. Simon. 2006. Alternative Pre-plant fumigation treatments for deciduous tree crops. 2006 Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions, November 6-9, 2006, Orlando, Florida. pp. 39-1 to 39-5.

Shrestha, A., G.T. Browne, Bruce D. Lampinen, Sally Schneider, Leo Simon, and Tom Trout. 2006. Weed species and their emergence patterns under methyl bromide and alternative fumigants in fruit nurseries. 2006 Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions, November 6-9, 2006, Orlando, Florida. pp. 117-1 to 117-4.

Browne, G., D. Doll, L. Schmidt, J. Connell, B. Holtz, S. Upadhyaya, B. Lampinen, D. Kluepfel, and S. Schneider. 2006. Prunus replant disease in California and its management without methyl bromide. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions, November 6-9, 2006, Orlando, Florida. pp. 64-1 to 64-4.

Olson, W.H. B. Lampinen, S. Metcalf, W. Micke, and D. E. Ramos. 2006. Walnut training and hedging for early production and profit – final report. Proc. Vth Int. Walnut Symp. Acta Hort. 705:487-492.

Lampinen, B.D., S.G. Metcalf, V. Gamble, K. Moore and W. Reil. 2006. Shoot growth characteristics following mechanical hedging and high limb pruning in ‘Tulare’ walnuts on two rootstocks at two spacings. Proc. Vth Int. Walnut Symp. Acta Hort. 705:521-527.

Kim, G.H., Burger, D.W., H. Lieth, N.H. Choi and B.R. Jeong. 2006. Metabolic heat and CO2 evolution rates measured by calorimetry during different in vitro induction processes of Cineraria. Thermochimica Acta 447:52-56.

Badenes, M.L., G. Llacer, and Crisosto, C.H.. 2006. Mejora genetica de la calidad en plantas. G. Llacer, J.J. Diez, J.M. Carrillo, and M.L. Badenes (eds.) Editorial Sociedad Española de Ciencias Horticolas, Universidad Politecnica de Valencia.  Paginas 549-578.

Band, L.E., M.L. Cadenasso, C.S. Grimmond, J.M. Grove, and S.T.A. Pickett. 2006. Heterogeneity in urban ecosystems: Patterns and process. G. Lovett, C.G. Jones, M.G. Turner, and K.C. Weathers (eds.).  Ecosystem Function in Heterogenous Landscapes, Springer Berlin Heidelberg, New York, pp. 257-278.

Meiners, S.J. and M.L. Cadenasso. 2006. The relationship between diversity and exotic plants:  cause or consequences of invasion?. Inderjit (ed) Invasive Plants:  Ecological and Agricultural Aspects.  Birkhauser-Verlag AG (Switzerland), pp. 97-114.

Cadenasso, M.L., S.T.A. Pickett, and J.M. Grove. 2006. Dimensions of ecosystem complexity: heterogeneity, connectivity, and history. Ecological Complexity 3:1-12.

Cadenasso, M.L., S.T.A. Pickett, and J.M. Grove. 2006. Integrative approaches to investigating human-natural systems: the Baltimore Ecosystem Study. Natures, Sciences, Sociétés 14:1-14.

Groffman, P.M., R.V. Pouyat, M.L. Cadenasso, W.C. Zipperer, K. Szlavecz, I.E. Yesilonis, L.E. Band, and G.S. Brush. 2006. Land use context and natural soil controls on plant community composition and soil nitrogen and carbon dynamics in urban and rural forests. Forest Ecology and Management 236:177-192.

Glozer, K. and J. Hasey. 2006. Chemical thinning in Cling Peaches. Cling Peach Review Winter/Spring 2006 p.16.

Glozer, K. 2006. Rest-Breaking Alternatives for Sweet Cherry and Update on Chill Accumulation. Tree Topics UCCE Newsletter, San Benito County 31(2).

Hill, J.E., A.J. Fischer, C.A. Greer, and R.G. Mutters. 2006. Herbicide Resistance Stewardship in Rice. April 2006.  UCCE Extension bulletin.

Rice, K.J.. 2006. Local adaptation, patterns of selection, and gene flow in the Californian serpentine sunflower (Helianthus exilis). Evolution. 60: 696-710.

Mangrich, M.M, R.T. Martinez-Font and M.E. Saltveit. 2006. Radicle length and osmotic stress affect the chilling sensitivity of cucumber radicles. Crop Science 46:398-403.

Glozer, K., J. Hasey and D. Slaughter. 2006. Improving fruit firmness and reducing fruit drop. Cling Peach Review Winter/Spring 2006 p.17.

Saier, M.H. Jr., C.V. Tran and R.D. Barabote. 2006. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Nucleic Acids Res (2006) 34:D181-186.

Canady, M. A., Y. Ji, and R. T. Chetelat. 2006. Homeologous recombination in Solanum lycopersicoides introgression lines of cultivated tomato. Genetics 174: 1775-1788.

Kurt Hembree. 2006. Kerb chemigation takes out weeds in lettuce trials. Western Farm Press: http://westernfarmpress.com/mag/farming_kerb_chemigation_takes/.

Chetelat, R.T. 2006. Revised list of miscellaneous genetic stocks. TGC 56: 37-56.

Chetelat, R. T. and R. A. Pertuze. 2006. Recent wild species collections from Chile. TGC 56: 13-14.

Mitcham, Elizabeth. 2006. Flavor Is The Key To Increased Consumption. Postharvest Column, American/Western Fruit Grower, February 2006, p. 46.

Chao, S., G.R. Lazo, F. You, C.C. Crossman, D.D. Hummel, N. Lui, D. Laudencia-Chingcuanco, J.A. Anderson, T.J. Close, J. Dubcovsky, B.S. Gill, K.S. Gill, J.P. Gustafson, S.F. Kianian, N.L.V. Lapitan, H.T. Nguyen, M.E. Sorrells, P.E. McGuire, C.O. Qualset, and O.D. Anderson. 2006. Use of a large-scale Triticeae EST resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.). Genome. 49:531-544.

Bregitzer P.,A.E. Blechl, D. Fiedler, J. Lin, P. Sebesta, J. Fernandez De Soto, O. Chicaiza, and J. Dubcovsky. 2006. Changes in high molecular weight glutenin subunit composition can be genetically engineered without affecting wheat agronomic performance. Crop Science 46:1553–1563.

Leslie, C.A., S.L. Uratsu, G.H. McGranahan, J. and A.M. Dandekar. 2006. Walnut (Juglans). In: Agrobacterium Protocols. Ed: L. Wang. Pub in Methods in Molecular Biology vol. 344 by Humana Press. New Jersey, USA.  pp. 297-307.

Gordon, T.R., S.C. Kirkpatrick, J. Hansen, and D.V. Shaw. 2006. Response of strawberry genotypes to inoculation with isolates of Verticillium dahliae differing in host origin. Plant Pathology, Vol. 55(6): 766-769.

Aguero, C.B., C.P. Meredith and A.M. Dandekar. 2006. Genetic transformation of Vitis vinifera L. cvs. ‘Thompson Seedless’ and ‘Chardonnay’ with the pear PGIP and GFP encoding genes. Vitis 45(1): 1-8.

Inoue, K., K.J. Furbee, S. Uratsu, M. Kato, A.M. Dandekar and Y. Ikoma. 2006. Catalytic activities and chloroplast import of carotenogenic enzymes from citrus. Physiol. Plant 127: 561-570.

Bradford, K.J., Van Deynze A. 2006. Academic training of plant breeders no longer meets demand. Seed World 144: 20-21.

Sudarshana, M.R., M.A Plesha, S.L. Uratsu, B.W. Falk, A.M. Dandekar, T-K. Huang and K.A. McDonald. 2006. A chemically inducible cucumber mosaic virus amplicon system for expression of heterologous proteins in plant tissues. Plant Biotechnology J. 4: 551-559.

KD Jermstad, LA Sheppard, BB Kinloch, A Delfino-Mix, ES Ersoz, KV Krutovsky and DB Neale. 2006. Isolation of a full-length CC-NBS-LRR resistance gene analog candidate from sugar pine showing low nucleotide diversity. Tree Genetics and Genomes. 2:76-85.

Gonzalez-Martinez, S. C., K. V. Krutovsky and D. B. Neale. 2006. Forest tree population genomics and adaptive evolution. New Phytologist 170:227-238.

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Boyd, N.B., E.B. Brennan and S.A. Fennimore. 2006. Stale Seedbed Techniques for Organic Vegetable Production. Weed Technology 20:1052-1057.

Gonzalez-Martinez, S.C., E. Ersoz, G.R. Brown, N.C. Wheeler and D.B. Neale. 2006. Candidate genes for drought-stress response in Pinus taeda L. DNA sequence variation and natural selection. Genetics 172:1915-1926.

Solomeshch A.I., S.N. Long, M.G. Barbour, and Berry, A.M.. 2006. Floristic Composition of Roadside Grasslands, Yolo County, California. F. J. Espinosa-García, T. R. Van Devender, T. Hubbard, and B. L. Harper-Lore (eds.)  Invasive Plants on the Move. Controlling them in North America, Univ. Arizona Press, Tucson.

Mitcham, Elizabeth. 2006. Differentiate your product with quality. Postharvest Column, American/Western Fruit Grower. February, 2004, p. 48.

Nguyen, T.X., M.R. Yen, R.D. Barabote and M.H. Saier Jr. 2006. Topological predictions for integral membrane permeases of the phosphoenolpyruvate:sugar phosphotransferase system. J Mol Microbiol Biotechnol 11:345-360.

Debut, A.J., Q.C. Dumay, R.D. Barabote and M.H. Saier Jr. 2006. The iron/lead transporter superfamily of Fe/Pb2+ uptake systems. J Mol Microbiol Biotechnol 11:1-9.

Au, K.M., R.D. Barabote, K.Y. Hu and M.H. Saier Jr. 2006. Evolutionary appearance of H+-translocating pyrophosphatases. Microbiology 152:1243-1247.

Shem-Tov, S., H.A. Ajwa, S.A. Fennimore, and J. Hunzie. 2006. Strawberry production and weed control in soils treated with Basamid and chloropicrin. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Roy, G., M.R. Sudarshana, D.E. Ullman, S-W. Ding, A.M. Dandekar and B.W. Falk. 2006. Chimeric cDNA sequences from Citrus tristeza virus confer RNA silencing-mediated resistance in transgenic Nicotiana benthmiana plants. Phytopathol. 96: 819-827.

Getachew, G., E.J. DePeters, W. Piteroff, D.H. Putnam and A.M. Dandekar. 2006. Does protein in alfalfa need protection from rumen microbes?. Prof. Animal Sci. 22: 364-373.

Ajwa, H.A. and C.Q. Winterbottom. 2006. Technical report. Alternative al bruomuro di metile nella fragolicoltura californiana. Frutticoltura 4:28-33. (Technical report).

Shem-Tov, S. H.A. Ajwa, and S. Fennimore. 2006. Strawberry yield and weed control with alternative fumigants applied in combination with metam under various tarps. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Fennimore, S., S. Shem-Tov, H.Ajwa and J.B. Weber. 2006. Retention of broadcast-applied fumigants with impermeable film in strawberry. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Klose, S. H.A. Ajwa, M. Bolda, O. Daugovish, and D. Shaw. 2006. Nitrogen dynamics in soils of alternative fumigation systems. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Ajwa, H.A., S. Klose, S. Shem-Tov, C. Elmore, and M.A. Mellano. 2006. Ranunculus production with methyl bromide alternatives. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Klose, S., H.A. Ajwa, S. Shem-Tov, S.A. Fennimore, K. Subbarao, J. MacDonald, H. Ferris, F. Martin, and J. Gerik. 2006. Methyl bromide alternatives for California-grown calla lilies. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Ha, W. and H.A. Ajwa. 2006. Plastic film permeability to soil fumigants. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Ajwa, H.A., S. Shem-Tov, S. Fennimore, and B. Weber. 2006. Efficacy of two formulations of Midas for strawberry production. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Klose, S., V. Acosta-Martinez, and H.A. Ajwa. 2006. Microbial community composition and enzyme activities in a sandy loam soil after fumigation with methyl bromide or alternative biocides. Soil Biol. Biochem. 38:1243-1254.

Ajwa, H.A. and T.J. Trout. 2006. Polyacrylamide and water quality effects on infiltration in sandy loam soils. Soil Sci. Soc. Am. J. 70:643-650.

Wallowitz, M., W.R. Peterson, S. Uratsu, S.S. Comstock, A.M. Dandekar and S.S Teuber. 2006. Jug r 4, a Legumin group food allergen from walnut (Juglans regia cv Chandler). J. Agric. Food Chem. 54: 8369-8375.

Barckley, K.K., S.L. Uratsu, T.M. Gradziel and A.M. Dandekar. 2006. Multidimensional Analysis of S-alleles from Cross-Incompatible Groups of California Almond Cultivars. J. Am. Soc. Hort. Sci. 131: 632-636.

Schneider, S.M., H. Ajwa, and T.J. Trout. 2006. Chemical alternatives to methyl bromide for nematode control under vineyard replant conditions. Am. J. Enol. Vitic. 57(2):183-193.

Zhou, R., L. Cheng and A.M. Dandekar. 2006. Down-regulation of sorbitol dehydrogenase and up-regulation of sucrose synthase in shoot tips of transgenic apple trees with decreased sorbitol synthesis. J Exptl. Bot. 57: 3647-3657.

Kim, H., Song, M.-J., and D. Potter. 2006. Medicinal efficacy of plants utilized as temple food in traditional Korean Buddhism. Journal of Ethnopharmacology 104:32-46.

Bortiri,, E., B. Vanden Heuvel, and D. Potter. 2006. Phylogenetic analysis of morphology in Prunus reveals extensive homoplasy. Plant Systematics and Evolution 259:53-71.

Parfitt, Dan.E., Joseph Maranto C. Kallsen. 2006. Female pistachio tree named ‘Golden Hills’. United States Plant Patent US PP 17,158. Oct. 17, 2006.

Ledig, F.T., P.D. Hodgskiss, and D.R. Johnson. 2006. Genetic diversity and seed production in Santa Lucia fir (Abies bracteata), a relict of the Miocene broadleaved evergreen forest. Conservation Genetics 7: 383-398.

Jaramillo-Correa, J.P., J. Beaulieu, F.T. Ledig, and J. Bousquet. 2006. Decoupled mitochondrial and chloroplast DNA population structure reveals Holocene collapse and population isolation in a threatened Mexican-endemic conifer. Molecular Ecology 15: 2787-2800.

Larson, K.D.. 2006. The University of California strawberry cultivar and production system improvement program. 2006 International Symposium: Development of everbearing strawberry as a new highland crop. National Institute of Highland Agriculture, Kangwon, S. Korea.Sept., 2006.

Zalom, F G., D. V. Shaw, and Larson, K.D.. 2006. Strawberry insects and mites in California, ecology and control. In: Pimentel, D. (ed.). Encyclopedia of Pest Management. Marcel Dekker, Inc. New York.

Shem-tov, S. S.A. Fennimore, and W.T. Lanini. 2006. Weed Management in Lettuce (Lactuca sativa) with Preplant Irrigation. Weed Tech. 20(4):1058-1065.

Sutton, K.F., W.T. Lanini, Mitchell, J.P., E.M. Miyao, and A. Shrestha. 2006. Weed Control, Yield, and Quality of Processing Tomato Production under Different Irrigation, Tillage, and Herbicide Systems. Weed Tech. 20(4):831-838.

Shrestha, A., W.T. Lanini, S. Wright, R. Vargas, and Mitchell, J.P.. 2006. Conservation tillage and weed management. . University of California Division of Agriculture and Natural Resources.  Publication 8200.  http://anrcatalog.ucdavis.edu/pdf/8200.pdf.

Canevari, M., T. Lanini, and S. Orloff. 2006. Roundup Ready alfalfa for stand establishment and special weed issues. In Proceedings, Western Alfalfa and Forage Conference.  pp. 77-82.

Orloff, S., M. Canevari, and T. Lanini. 2006. Avoiding weed shifts and resistance in Roundup Ready alfalfa. In Proceedings, Western Alfalfa and Forage Conference.  pp. 83-93.

Lanini, W.T. 2006. Distribution and relative glyphosate resistance of ryegrass in California. 58th Annual California Weed Science Society meeting. 58:131-134.

Canevari, W.M., S.B. Orloff,  W. T. Lanini, R. G. Wilson and R.N. Vargas. 2006. Alfalfa Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines.  http://www.ipm.ucdavis.edu/PMG/selectnewpest.alfalfa-hay.html.

Hembree, K.J., C.A. Ingels, and W.T. Lanini. 2006. Grape Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines.  http://www.ipm.ucdavis.edu/PMG/selectnewpest.grapes.html.

Shrestha, A., W.T. Lanini and K.J. Hembree. 2006. Nectarine Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines.  http://www.ipm.ucdavis.edu/PMG/selectnewpest.nectarine.htm.

Shrestha, A., W.T. Lanini and K.J. Hembree. 2006. Peach Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines.  http://www.ipm.ucdavis.edu/PMG/selectnewpest.peach.html.

Shrestha, A., W.T. Lanini and F.J.A. Niederholzer. 2006. Plum Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines.  http://www.ipm.ucdavis.edu/PMG/selectnewpest.plum.html.

Shrestha, A., W.T. Lanini and F.J.A. Niederholzer. 2006. Prune Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines.  http://www.ipm.ucdavis.edu/PMG/selectnewpest.prune.html.

Temple, S., Morris, C., DeBen, C., Lowe, I., Gilbertson, B., Roberts, P., Waines G.,  Muelbauer, F., and  UCCE Farm Advisors sTatewide. 2006. p 1-22, University of California Dry Bean Research. 2005 Progress Report.

Canevari, M., Godfrey, L., Temple,S., Witte, R., Whiteley, S. 2006. Twospotteed Spider Mite (Tetranychus urticae) Control in Baby Lima Beans. p. 23-24 University of California Dry Bean Research. 2005 Progress Report.

Canevari, M., Godfrey, L., Temple,S., Witte, R., Whiteley, S.,  Colbert, D. 2006. Control of the Western Tarnished Plant Bug with Warrior in California Blackeyes. p. 25-26   University of California Dry Bean Research. 2005 Progress Report.

Canevari, M., Godfrey, L., Temple,S., Witte, R., Whiteley, S.,  Colbert, D. 2006. Bush Baby Lima Beans- Lygus Control and Variety Tolerance for Henderson and Luna p. 27-29. University of California Dry Bean Research. 2005 Progress Report.

Canevari, M., Godfrey, L., Temple,S., Witte, R., Whiteley, S.,  Colbert, D. 2006. Control of Lygus  with Avaunt on New Vine Baby Lima Bean Varieties (IPM). p. 30-32 University of California Dry Bean Research. 2005 Progress Report.

Canevari, M., Temple,S., Witte, R., Whiteley, S.,  Colbert, D. 2006. Plant Growth Regulator Study in Baby Lima Beans. p. 33-35  University of California Dry Bean Research. 2005 Progress Report.

Canevari, M., Temple,S., Witte, R., Whiteley, S.,  Colbert, D. 2006. Garbanzo Variety trial. p 38-39  University of California Dry Bean Research. 2005 Progress Report.

Deelo, J., Temple, S. 2006. Field Study of Factors Associated with Late-Season Decline in California Dry Beans. p. 40-44  University of California Dry Bean Research. 2005 Progress Report.

Ehlers, J., Roberts P., Temple, S., Matthews, W.,  Frate, C., Sanden, B. 2006. Blackeye Varietal Improvement – 2005. Progress Report  p. 50-63  University of California Dry Bean Research. 2005 Progress Report.

Canevari, M., Godfrey, L., Temple,S., Lewis, R. 2006. Efficacy of Selected Insecticides on Lygus Bugs in Baby Lima Beans p. 65-71. 63  University of California Dry Bean Research. 2005 Progress Report.

Temple, S., deBen, C. 2006. The Effects of  Bradyrhizobium lupine Innoculation on Dry Matter and Nitrogen Accumulation, Seed Yield and Protein Content in Sweet White Lupin p. 85-87. 63  University of California Dry Bean Research. 2005 Progress Report.

Staby, G. and Reid, M.S.. 2006. Are you a walker or a talker? A top 10 list takes aim at floral success. *The Produce News* 109.

Shaw, Douglas V., Larson, K.D., Thomas R. Gordon, and Frank G. Zalom. 2006. Strawberry genetics, breeding, physiology and production management. California Strawberry Commission Annual Production Research Report:  2005-06, 12 pp.

Shaw, Douglas V., John Hansen, and Greg T. Browne. 2006. Genotypic variation for resistance to Phytophthora cactorum in a California strawberry breeding population. J. Amer. Soc. Hort. Sci. 131(5):xxx-xxx.  4 pp.

Oki, L.R., N.S. Mattson and J.H. Lieth. 2006. Predicting stem length of cut flower roses at harvest using stem elongation rates in relationship to developmental events. Acta Hort. (ISHS) 718:113-120.

Johnson, C., Bowman, L., Adai, A., Vance, V., Sundaresan, V. 2006. CSRDB: a small RNA integrated database and browser resource for cereals. Nucleic Acids Res., 35: D829-D833.

Muehlbauer, F.J., S.R.Temple, and W.Chen. 2006. Registration of “Dylan” Chickpea Cultivar. Crop Sci.46:2705.

Njambere, E., W.Chen, C.Frate, S.Temple, and F.J.Muehlbauer. 2006. Diversity of  Sclerotinia isolates from chickpea from central California. Phytopathology 96:S85.

Deering R.H. & Young, T.P.. 2006. Germination speeds of exotic annual and native perennial grasses in California and the potential benefits of seed priming for grassland restoration. Grasslands 15:1, 14-17.

McCauley, D.J., F. Keesing, Young, T.P., J. Peters & B.F. Allan. 2006. Indirect effects of large herbivorous mammals on snakes in an African savanna. Ecology 87:2657-2663.

Young, T.P. and J.R. Goheen. 2006. Whistling thorn recruitment is affected in unexpected ways by large mammals. (“KLEE Corner” #6). Laikipia Wildlife Forum Newsletter.  January Issue, page 10.

Kliebenstein, D.J., West, M.A.L., H. van Leeuwen, K. Kim, R.W. Doerge, R.W. Michelmore, and D.A. St. Clair. 2006. Genomic survey of gene expression diversity in Arabidopsis thaliana. Genetics 172(2):1179-1189.

West, M.A.L., H. van Leeuwen, A. Kozik, D.J.  Kliebenstein, R.W. Doerge, D.A.  St. Clair, and R.W. Michelmore. 2006. High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Research 16(6):787-95.

Kliebenstein, D.J., West, M.A.L., H. van Leeuwen, K. Kim, R.W. Doerge, and D.A. St. Clair. 2006. Identification of QTLs Controlling Gene Expression Networks Defined A Priori. BMC Bioinformatics 7(1):308.

Hartz, T.K. and P.R. Johnstone. 2006. Relationship between soil phosphorus availability and phosphorus loss potential in runoff and drainage. Comm. Soil Sci. Plant Anal. 37:1525-1536.

Hartz, T.K. 2006. Vegetable production best management practices to minimize nutrient loss. HortTechnology 16:398-403.

Hartz, T.K., P.R. Johnstone and M. LeStrange. 2006. Late-season deficit irrigation is a reliable tool for soluble solids improvement in drip-irrigated processing tomato production. Acta Hort. 724:61-65.

Mitchell, J.P., T.K. Hartz, B.R. Hanson, D.M. May, W.R. Horwath, K.K. Klonsky, E.M. Miyao and W.W. Wallender. 2006. Recent advances in tomato production systems in California. Acta Hort. 724:165-175.

Miyao, G., T. Hartz and M. Kochi. 2006. Influence of legume and mustard cover crops on tomato production in the Sacramento Valley. Acta Hort. 724:177-181.

Dandekar, A.M. 2006. Transgenic and genomic technologies unlock a systems view for postharvest. Proceedings of Expert Consultation Meeting to Strengthen Linkages between Postharvest and Biotechnology, Hammamet, Tunisia, 12-14 Sept 2006. Pp. 70-83.

Dandekar, A.M. 2006. Biotechnology curriculum at UC Davis. Proceedings of Expert Consultation Meeting to Strengthen Linkages between Postharvest and Biotechnology, Hammamet, Tunisia, 12-14 Sept 2006. Pp. 142-144.

Gordon, D., C. Damiano, and T. M. DeJong. 2006. Preformation in vegetative buds of Prunus persica: factors influencing number of leaf primordial in overwintering buds. Tree Physiology 26:537-544.

Gordon, C., A. Rosati, C. Damiano and T.M. DeJong. 2006. Seasonal effects of light exposure, temperature, trunk growth and plant carbohydrate status on the initiation and growth of epicormic shoots in Prunus persica. J. Hort. Sci. and Biotechnology 81:421-428.

Solari, L.I. and T.M. DeJong. 2006. The effect of root pressurization on water relations, shoot growth, and leaf gas exchanges of peach (Prunus persica) trees on rootstocks with differing growth potential and hydraulic conductance. J. Experimental Botany 57: 1981-1989.

Solari, L.I., Johnson, R.S. and T.M. DeJong. 2006. Hydraulic conductance characteristics of peach (Prunus persica) trees on different rootstocks are related to biomass production and distribution. Tree Physiology 26: 1343-1350.

Wright, S.D., R.B. Hutmacher. 2006. Cotton Harvest Aid Management – 2006. University of CA Cotton website: (http://cottoninfo.ucdavis.edu), 2pp.

Hutmacher, R.B., M.P. Keeley, B.H, Marsh, S.D. Wright, D.S. Munk, R.N. Vargas. 2006. HVI Fiber Quality Summary – Acala, Pima and CA Upland Advanced Strains Tests – SJV Cotton. Univ. CA Coop. Extension, Shafter REC, 7 pp.  (Also available on UCCE cotton web site:  http://cottoninfo.ucdavis.edu).

Hartz, T.K. 2006. Reevaluating tissue analysis as a management tool for lettuce and cauliflower. CDFA Fertilizer Research and Education Program Final Report.

Hartz, T.K. 2006. Drip irrigation management for cantaloupes. San Joaquin Valley Vegetable Notes newsletter.

Hartz, T.K. and R. Smith. 2006. Tissue testing and fertilization practices revisited for lettuce and cauliflower. Vegetables West 10(4)14-15.

Hartz, T.K. 2006. Detecting and correcting soil calcium limitations. Proceedings CDFA Fertilizer Research and Education Program Annual Meeting, pp. 25-28.

Hartz, T.K. 2006. Evaluation of agronomic and environmental benefits of low biomass cover crops for processing tomato rotations. California Tomato Research Institute annual report.

Bancroft, J.S., R.B. Hutmacher, L.D. Godfrey, P.B. Goodell, M. McGuire, P. Funk, S.D. Wright. 2006. Comparison of Sticky Cotton Indices and Sugar Composition. J. Cotton Sci.  10:97-104.

Ulloa, M., R.B. Hutmacher, R. M. Davis, S.D. Wright, R. Percy, B. Marsh. 2006. Breeding for Fusarium Wilt Race 4 Resistance in Cotton Under Field and Greenhouse Conditions. J. Cotton Sci.  10:114-127.

Hanson, B.R., R.B. Hutmacher, D.M. May. 2006. Drip Irrigation of Tomato and Cotton Under Shallow Saline Ground Water Conditions. Irrigation and Drainage Systems.  20:155-175.

Hutmacher, R.B., R.N. Vargas, S.D. Wright. 2006. Methods to Enable the Coexistence of Diverse Cotton Production Systems. Agricultural Biology In California Series, Publication # 8191.  Univ. of CA Div. Agric. Nat. Resources, http://anrcatalog.ucdavis.edu.

Ulloa, M., R. Percy, R.B. Hutmacher, R.G. Cantrell. 2006. Registration of SJ-U86 Cotton Germplasm Line with High Yield and Excellent Fiber Quality. Crop Sci.  46:2336-2338.

Fritschi, F.B., B.A. Roberts, R.B. Hutmacher, D.W. Rains, R.L. Travis. 2006. Fate of Soil Applied Nitrogen Under Irrigated Cotton Production. Proc. California Amer. Soc. Agron. Meetings, Visalia, CA, Feb. 7, 2006.  37-38.

Phene, C.J., D. Hannaford, J. Phene, R.B. Hutmacher, J. Anshutz, B.H, Marsh, M. Dowgert. 2006. Low Pressure Systems Reduce Agricultural Inputs. In: Proc. 27th Annual International Irrigation Show, Nov. 5-7, 2006, San Antonio, TX.

Zhang, Z., Ober, J.A. and D.J. Kliebenstein. 2006. The Gene Controlling the Quantitative Trait Locus EPITHIOSPECIFIER MODIFIER1 Alters Glucosinolate Hydrolysis and Insect Resistance in Arabidopsis. Plant Cell 18(6):1524-36.

Grove, J.M., M.L. Cadenasso, W.R. Burch, Jr., S.T.A. Pickett, J.P.M. O’Neil-Dunne, K. Schwarz, M.A. Wilson, A.R. Troy and C. Boone. 2006. Data and methods comparing social structure and vegetation structure of urban neighborhoods in Baltimore, Maryland. Society & Natural Resources 19(2):117-136.

Grove, J.M., A.R. Troy, J.P.M. O’Neil-Dunne, W.R. Burch, Jr., M.L. Cadenasso, and S.T.A. Pickett. 2006. Characterization of households and its implications for the vegetation of urban ecosystems. Ecosystems 9:578-597.

Berenguer, M.J., P.M. Vossen, S.R. Grattan, J.H. Connell, and V.S. Polito. 2006. Tree irrigation levels for optimum chemical and sensory properties of olive oil. HortScience 41: 427-432.

Clayton, M., W.V. Biasi, I.T. Agar, S.M. Southwick and E.J. Mitcham. 2006. Sensory quality of ‘Bing’ sweet cherries following preharvest treatment with hydrogen cyanamide, calcium ammonium nitrate or gibberellic acid. HortScience 41(3):745-748.

Monzon, M.E., B. Biasi, T.L. Simpson, J. Johnson, X. Feng, D.C. Slaughter, and E.J. Mitcham. 2006. Effect of radio frequency heating as a potential quarantine treatment on the quality of ‘Bing’ sweet cherry fruit and mortality of codling moth larvae. Postharvest Biology and Technology 40:197-203.

Mitcham, E., T. Martin and S. Zhou. 2006. Mode of action of insecticidal controlled atmospheres. Bull. Entomol. Res.96:213-222.

Wang, S., J. Tang, T. Sun, E.J. Mitcham, T. Koral, S.L. Birla. 2006. Considerations in design of commercial radio frequency treatments for postharvest pest control in inshell walnuts. J. Food Eng. 77:304-312.

Chicaiza, O., I.A. Khan, X. Zhang, J.C. Brevis, Jackson, L.F., X. Chen, and J. Dubcovsky. 2006. Registration of five wheat isogenic lines for leaf rust and stripe rust resistance genes. Crop Science 46: 485-487.

Jackson, L.F., B. Fernandez, H. Meister, and M. Spiller. 2006. Importance of Small Grain Crops in California Agriculture. University of California Agriculture and Natural Resources, Publication 8164.

Jackson, L.F. and J. Williams. 2006. Growth and Development of Small Grains. University of California Agriculture and Natural Resources, Publication 8165.

Kearney, T., B. Marsh, S. Wright, and Jackson, L.F.. 2006. Seedbed Preparation, Sowing, and Residue Management of Small Grain. University of California Agriculture and Natural Resources, Publication 8166.

Fulton, A., K. Bali, Z. Mousli, and Jackson, L.F.. 2006. Irrigation and Water Relations of Small Grains. University of California Agriculture and Natural Resources, Publication 8168. .

Mitchell, J.P., M. Van Horn, D. Munier, and Jackson, L.F.. 2006. Small Grain Cover Crops. University of California Agriculture and Natural Resources, Publication 8174.

Munier, D., T. Kearney, G.S. Pettygrove, K. Brittan, M. Mathews, and Jackson, L.F.. 2006. Fertilization of Small Grains. University of California Agriculture and Natural Resources, Publication 8167.

Jackson, L.F.. 2006. Pest Management of Small Grains – Diseases. University of California Agriculture and Natural Resources, Publication 8169.

Godfrey, L., E. Natwick, S. Wright, and Jackson, L.F.. 2006. Pest Management of Small Grains – Insects. University of California Agriculture and Natural Resources, Publication 8170.

Whisson, D., T. Salmon, and Jackson, L.F.. 2006. Pest Management of Small Grains – Vertebrates. University of California Agriculture and Natural Resources, Publication 8171.

Gallagher, L.W., Jackson, L.F., and H.E. Vogt. 2006. Registration of ‘Ishi’ Barley. Crop Science 46: 1396.

Marsh, B., and Jackson, L.F.. 2006. Small Grains in Crop Rotations. University of California Agriculture and Natural Resources, Publication 8175.

Kearney, T., S. Garcia, and Jackson, L.F.. 2006. Harvesting and Storage of Small Grains. University of California Agriculture and Natural Resources, Publication 8176.

Collar, C., S. Orloff, M. Mathews, S. Wright, and Jackson, L.F.. 2006. Small Grain Forages. University of California Agriculture and Natural Resources, Publication 8173.

Canevari, M., S. Orloff, R. Vargas, S. Wright, R. Wilson, D. Cudney, and Jackson, L.F.. 2006. Pest Management of Small Grains – Weeds. University of California Agriculture and Natural Resources, Publication 8172.

Wang, S., M. Monzon, Y. Gazit, J. Tang, E.J. Mitcham, and J.W. Armstrong. 2005. Temperature dependent dielectric properties of subtropical and tropical fruits with insects. Trans ASAE 48(5):1873-1881.

Bonman, J.M., H.E. Bockelman, B. Steffenson, and Jackson, L.F.. 2005. Disease and insect resistance in cultivated barley accessions from the USDA National Small Grains Collection. Crop Science 45:1271-1280.

Wroblewski, T., Tomczak, A., and Michelmore, R. W. 2005. Optimization of Agrobacterium-mediated transient assays of gene expression in lettuce, tomato and Arabidopsis. Plant Biotechnology Journal  3:259-273.

Brown, B.A., Cloix, C., Jiang, G.H., Kaiserli, E., Herzyk, P., Kliebenstein, D.J. and G.I. Jenkins. 2005. A UV-B-specific signaling component orchestrates plant UV-protection. Proc. Natl. Acad. Sci. USA 102(50):18225-18230.

Kliebenstein, D.J., Rowe, H.C. and K.J. Denby. 2005. Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen susceptibility. Plant Journal 44(1):25-36.

Windsor, A.J., Reichelt, M., Figuth, A., Svatoš, A., Kroymann, J., Kliebenstein, D.J., Gershenzon, J. and T. Mitchell-Olds. 2005. Geographic and evolutionary diversification of glucosinolates among near relatives of Arabidopsis thaliana (Brassicaceae). Phytochemistry 66(11):1321-1333.

Kliebenstein, D.J., Kroymann, J., and T. Mitchell-Olds. 2005. The glucosinolate-myrosinase system in an ecological and evolutionary context. Current Opinion in Plant Biology 8(3):264-271.

Murray, S.L., Adams, N., Kliebenstein, D.J., Loake, G.J. and K.J. Denby. 2005. A constitutive PR-1::Luciferase expression screen identifies Arabidopsis mutants with differential disease resistance to biotrophic and necrotrophic pathogens. Molecular Plant Pathology 6(1):31-41.

Choi, Y,J., F. A. Tomás-Barberán, and M.E. Saltveit. 2005. Wound-induced browning in lettuce (Lactuca sativa L.) leaf tissue in reduced by exposure to n-alcohols. Postharvest biology and technology vol. 37, no1, pp. 47-55.

Saltveit, M.E. 2005. Influence of heat shocks on the kinetics of chilling-induced ion leakage from tomato pericarp discs. Postharvest Biology and Technology vol. 36, no1, pp. 87-92.

Kang, H.M., K.W. Park, and M.E. Saltveit. 2005. Chilling tolerance of cucumber (Cucumis sativus) seedling radicles is affected by radicle length, seedling vigor, and induced osmotic- and heat-shock proteins. Physiologia Plantarum vol. 124, no4, pp. 485-492.

Saltveit, M.E. 2005. Fruit ripening and fruit quality. E. Heuvelink (ed.) Tomatoes. CAB International pp. 145-170..

Saltveit, M.E. 2005. Postharvest biology and handling. E. Heuvelink (ed.) Tomatoes. CAB International pp. 305-324..

Baldwin, A., A. Wardle, R. Patel, P. Dudley, S.K. Park, D. Twell, K. Inoue, and P. Jarvis. 2005. A molecular-genetic study of the Arabidopsis toc75 gene family. Plant Physiology 138:715-733.

Hartz, T.K. 2005. Factors affecting carrot cracking. Carrot Country Magazine.

Hartz, T.K. 2005. Fertilizer management for high-yield tomato production. Proceedings of the International Seminar on processing tomato production, Talca, Chile, October 13-14.

Kim, Y., R.B. Hutmacher, R.M. Davis. 2005. Characterization of California Isolates of Fusarium oxysporum f. sp. Vasinfectum. Plant Disease  89:366-372.

Fritschi, F.B., B.A. Roberts, D.W. Rains, R.L. Travis, R.B. Hutmacher. 2005. Recovery of Residual Fertilizer-N and Cotton Residue-N by Acala and Pima Cotton. Soil Sci. Soc. Amer. J.  69:718-728.

Hutmacher, R.B., R.M, Davis, M. Ulloa, S.D. Wright, D.S. Munk, B.H. Marsh, R.N. Vargas, B.A. Roberts, M.P. Keeley, P.B. Goodell, Y. Kim, R. Percy. 2005. New Approaches in Assessing Fusarium in Cotton. Proc. CA Agric. Symposium, Sacramento, CA, March 23-23, 2005.  Veget. Research Info. Ctr., Univ. CA Davis, pp. 107-108.

Hutmacher, R.B., R.M. Davis, Y. Kim, M. Ulloa, S.D. Wright, D.S. Munk, R.N. Vargas, B.A. Roberts, B.H. Marsh, R. Percy, M.P. Keeley. 2005. . pp. 245-246.  In: Proc. Beltwide Cotton Conf., Jan. 4-7, 2005, New Orleans, LA.  National Cotton Council, Memphis, TN.

Hutmacher, R.B., S.D. Wright, R.N. Vargas, B.H. Marsh, D.S. Munk, B.L. Weir, M.P. Keeley, G. Banuelos, T. Martin-Duvall, H. Wu, A. Shrestha. 2005. Double Row 30-Inch Cotton In California:   A Long-Term Summary. Pp. 1975-1980.  In: Proc. Beltwide Cotton Conf., Jan. 4-7, 2005, New Orleans, LA.  National Cotton Council, Memphis, TN.

Hutmacher, R.B., M.P. Keeley, B.H, Marsh, S.D. Wright, D.S. Munk, R.N. Vargas, B.A. Roberts, R. Delgado. 2005. HVI Fiber Quality Summary – Acala, Pima and CA Upland Advanced Strains Tests – SJV Cotton. Univ. CA Coop. Extension, Shafter REC, 8 pp.  (Also available on UCCE cotton web site:  http://cottoninfo.ucdavis.edu.

Mitchell, J.P., R.B. Hutmacher, D.S. Munk, S.D. Wright, R.N. Vargas, B. Prys, R. Fry, R. Roy. 2005. Conservation Tillage:  Making It Work in California. Pp. 3103-3106.  In:  Proc.  Beltwide Cotton Conf., Jan. 4-7, 2005, New Orleans, LA.  National Cotton Council, Memphis, TN.

Young, T.P.. 2005. The pathology of no herbivory: long-term effects of herbivore exclusion in an African savanna. (“KLEE Corner” #5). Laikipia Wildlife Forum Newsletter.  March/April Issue.

Johnstone, P.R., T.K. Hartz, M.D. Cahn and M.R. Johnstone. 2005. Lettuce  response to phosphorus fertilization in high phosphorus soils. HortScience 40:1499-1503.

Hartz, T.K. 2005. Managing potassium fertilization. California Tomato Grower 48(2):18-19.

Gomez, S.K., M.M. Cox, J.C. Bede, K. Inoue, H.T. Alborn, J.H. Tumlinson, and K.L. Korth. 2005. Lepidopteran herbivory and oral factors induce transcripts encoding novel terpene synthases in Medicago truncatula. Archives of Insect Biochemistry and Physiology 58:114-127.

DeJong, T.M., Johnson, R.S., J.F. Doyle, and D. Ramming. 2005. Research yields size-controlling rootstocks for peach production. California Agriculture 59:80-83.

Allen, M.T., P. Prusinkiewicz, and T.M. DeJong. 2005. Using L-systems for modeling source-sink interactions, architecture and physiology of growing trees: the L-PEACH model. New Phytologist 166:869-888.

Doyle, J.F., C.J. DeBuse, and T.M. DeJong  . 2005. Prune tree named ‘D6N-72’. United States Plant Patent No. PP15, 547.  Feb. 8, 2005.

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Mahhou, A., T.M. DeJong, T. Cao, and K.S. Shackel. 2005. Water stress and crop load effects on vegetative and fruit growth of ‘Elegant Lady’ peach [Prunus persica (L.) Batch] trees. Fruits 60:55-68.

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Young, T.P., T.M. Palmer and M.E. Gadd. 2005. Competition and compensation among cattle, zebras, and elephants in a semi-arid savanna in Laikipia, Kenya. Biological Conservation 121:351-359.

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Stanton, M.L., T.M. Palmer, & Young, T.P.. 2005. Ecological barriers to early colony establishment in three coexisting acacia-ant species in Kenya. Insectes Sociaux 52:393-401.

Warui, C.M., M.H. Villet, T.P. Young & R. Jocqué. 2005. Influence of grazing by large mammals on the spider community of a Kenyan savanna biome. Journal of Arachnology 33:269-279.

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Kohler, G.R. and D.A. St. Clair. 2005. Variation for resistance to aphids (Homoptera: Aphididae) among tomato inbred backcross lines derived from wild Lycopersicon species. Journal of Economic Entomology 98:988-995.

Zalom, Frank,  Patricia Thompson, Nikki Nicola, and Douglas Shaw. 2005. Strawberry: Fragaria x ananassa Duch, ‘Diamante’, Central coast acaricide evaluation, 2002. Arthropod Management Tests, Vol. 29:C29. 2 pp.

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Jiang, L., S.L. Yang, L.F. Xie, C.S. Puah, X.Q. Zhang, W.C. Yang, V. Sundaresan, and D. Ye. 2005. VANGUARD1 encodes a pectin methylesterase that enhances pollen tube growth in the Arabidopsis style and transmitting tract. The Plant Cell, 17(2): 584-596.

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Shi, D.Q., J. Liu, Y.H. Xiang, D. Ye, V. Sundaresan, and W.C. Yang. 2005. SLOW WALKER1, essential for gametogenesis in Arabidopsis, encodes a WD40 protein involved in 18S ribosomal RNA biogenesis. The Plant Cell, 17(8): 2340-2354.

Kumar, C.S., R.A. Wing, and V. Sundaresan. 2005. Efficient insertional mutagenesis in rice using the maize En/Spm elements. Plant Journal, 44(5): 879-892.

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Shaw, Douglas V. and Larson, K.D.. 2005. Genetic variation and response to selection for early season fruit production in California strawberry seedling (Fragaria x ananassa Duch.) populations. J. Amer. Soc. Hort. Sci.  130(1):41-45.

Gordon, Thomas R., Douglas V. Shaw, and Larson, K.D.. 2005. Comparative response of strawberries to conidial root-dip inoculations and infection by soilborne microsclerotia of Verticillium dahliae Kleb. HortScience 40(5):1398-1400.

Shaw, Douglas V. and Thomas R. Famula. 2005. Complex segregation analysis of day-neutrality in domestic strawberry (Fragaria x ananassa Duch.). Euphytica 145:331-338.

DeBuse, Carolyn, Douglas V. Shaw, and Theodore M. DeJong. 2005. Response to inbreeding of seedling traits in a Prunus domestica L. breeding population. J. Amer. Soc. Hort. Sci. 130(6):904-911.

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Canevari, M, Temple, S., Wittie, R. 2005. IR-4 Miticides for Spider Mite Control in Dry Beans p 47-49. University of California Dry Bean Research. 2004 Progress Report.

Hembree, K., Va,N., Mueller,S., Temple, S. 2005. Herbicide Studies in Garbanzos p. 53-60. University of California Dry Bean Research. 2004 Progress Report.

Teuber, L.R., Labavitch, J.M., Shakel, K.A., Temple, S. 2005. Selection for Resistance to Lygus Bug in Lima Bean based on Inhibition of Lygus Salivary Polygalacturonase. P. 62-66  University of California Dry Bean Research. 2004 Progress Report.

Suslow, Trevor. 2005. More is not Better with Glycoalkaloids. AVG Jan., p. 48.

Suslow, Trevor. 2005. It’s Not Easy to Manage Potato Wash Water. AVG Sept., p. 26.

Parnell, T.L., L. J. Harris, and T. V. Suslow. 2005. Reducing Salmonella on cantaloupes and honeydew melons using wash practices applicable to postharvest handling, foodservice, and consumer preparation. Int. J. Food Microbiol. 99:59-70.

Suslow, T,. and L.J. Harris. 2005. Growing seed sprouts at home. DANR Publication, 8151.

Campos-Vargas, R., Nonogaki, H., Suslow, T. and M. Saltveit. 2005. Heat shock treatments delay the increase in wound-induced phenylalanine ammonia-lyase activity by altering its expression, not its induction in Romaine lettuce (Lactuca sativa) tissue. Physiologia Plantarum 123:82-91.

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Van Deynze, A.E., Sundstrom, F.J., and Bradford, K.J.. 2005. Pollen-mediated gene flow in California cotton depends upon pollinator activity. Crop Sci. 45:1565–1570.

Lanini, W.T. 2005. Cucurbit Pest Management Guidelines - Weeds. UC IPM Pest Management Guidelines. http://www.ipm.ucdavis.edu/PMG/selectnewpest.cucurbits.html.

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Dangl, Gerald S., Keith Woeste, Mallikarjuna K. Aradhya, Anne Koehmstedt, Chuck Simon, Daniel Potter, Charles A. Leslie, and Gale McGranahan. 2005. Characterization of 14 microsatellite markers for genetic analysis and cultivar identification of walnut. Journal of the American Society for Horticultural Science 130(3):348-354.

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Gao, Muqiang, Genyi Li, Daniel Potter, W. Richard McCombie, and Carlos F. Quiros. 2005. Comparative analysis of methylthioalkylmalate snythase (MAM) gene family and flanking DNA sequences in Brassica oleracea and A. thaliana. Plant Cell Reports 25:592-598.

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Schneider, S. T. Trout and H. Ajwa. 2005. Field evaluations of methyl bromide alternatives for vineyard replant. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Browne, G., J. Duniway, B. Westerdahl, F. Martin, H. Ajwa, and S. Fennimore. 2005. Effects of VIF and chloropicrin and Inline rates on survival of nematodes and pathogens in soil. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Ajwa, H.A., S. Fennimore, G. Browne, F. Martin, T. Trout, J. Duniway, S. Shem-Tov, and O. Daugovish. 2005. Strawberry yield with various rates of chloropicrin and Inline applied under VIF. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Fennimore, S., Z. Kabir, H. Ajwa, O. Daugovish, and K. Roth. 2005. Chloropicrin and Inline lethal dose on nutsedge and knotweed under impermeable film. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Shem-Tov, S., S. Klose, S. Fennimore, H. Ajwa, and K. Roth. 2005. Effect of band or bed top applied Basamid on strawberry weed control and yield. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Cahn, M., and H. Ajwa. 2005. Management of salinity for lettuce production. Monterey County Cooperative Extension Crop Notes, May/June 2005.

Stonestrom, A., R.D. Barabote, C.F. Gonzalez and M.H. Saier Jr. 2005. Bioinformatic analyses of bacterial HPr kinase/phosphorylase homologues. Res Microbiol 156:443-451.

Barabote, R.D. and M.H. Saier Jr. 2005. Comparative genomic analyses of the bacterial phosphotransferase system. Microbiol Mol Biol Rev 69:608-634.

Saier, M.H., R.N. Hvorup and R.D. Barabote. 2005. Evolution of the bacterial phosphotransferase system: from carriers and enzymes to group translocators. Biochem Soc Trans 33:220-224.

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Stromburger, M.E., S. Klose, H.A. Ajwa, T. Trout and S.A. Fennimore. 2005. Microbial Populations and Enzyme Activities in Soils Fumigated with Methyl Bromide Alternatives. Soil Sci. Soc. Am. J. 69:1987-1999.

Cao, T., R.A. Duncan, M.V. Mc Kenry, K.A. Shackel, T. DeJong, and B. Kirkpatrick. 2005. The Interaction between Nitrogen Fertilized Peach Trees and the Expression of syrB, a Gene Involved in Syringomycin Production in Pseudomonas syringae pv. syringae. Phytopathology, Vol 95(5), 581-586.

Zhang, Z., G. Gosset, R. Barabote, C.S. Gonzalez, W.A. Cuevas and M.H. Saier Jr. 2005. Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli. J Bacteriol 187:980-990.

Lorca, G.L., Y.J. Chung, R.D. Barabote, W. Weyler, C.H. Schilling and M.H. Saier Jr. 2005. Catabolite repression and activation in Bacillus subtilis: dependency on CcpA, HPr and HprK. J Bacteriol 187:7826-7839.

Matthews, M.A. and K.A. Shackel. 2005. Growth and water transport in flesh fruit. In Vascular Transport in Plants. ( N.M. Holbrook and M.A. Zwieniecki, eds.), pp. 189 197. Elsevier Academic Press, Boston, MA.

Goodstal FJ, Kohler GR, Randall LB, Bloom, A.J., St. Clair DA. 2005. Validation of chilling tolerance QTLs in tomato using repeated mapping in an interspecific BC1 population and near-isogenic line. Theor Appl Genet: Aug. 10.

Schwember, A.R., and Bradford, K.J.. 2005. Drying rates following priming affect temperature sensitivity of germination and longevity of lettuce seeds. HortScience 40: 778-781.

Nelson, S., A. Khan, C. Simpson, H. Ajwa, and C. Duerksen. 2005. Behavior of MITC in soil after application of metam-Na and metam-k. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Ajwa, H.A., S. Shem-Tov, S. Klose, S. Fennimore, K. Roth. 2005. Strawberry yield and weed control with shank and drip applied Midas. Annual International Research Conference on Methyl Bromide Alternatives and Emissions Reductions.

Holappa, L.D., M.K. Walker-Simmons, T.H.D. Ho, Dean E. Riechers, Diane M. Beckles and Russell L. Jones. 2005. A Triticum tauschii protein kinase related to wheat PKABA1 is associated with ABA signaling and is distributed between the nucleus and cytosol. J. Cer. Sci. 41(3) :333-346.

Navarro-Avino J.P., Bennett, A.B.. 2005. Role of Ca2+-ATPase induced by ABA and IAA in the generation of specific Ca2+ signals. Biochem. Biophys. Res. Commun.  329:406-415.

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Smith, R.F., and S.A. Fennimore. 2005. Weeds. In:  University of California IPM Pest Management Guidelines:  Strawberry.

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Ahuja M.R. and Neale D.B. 2005. Evolution of Genome Size in Conifers. Silvae Genetica, 54(3): 126-137.

Saltveit, M.E. 2005. Aminoethoxyvinylglycine (AVG) reduces ethylene and protein biosynthesis in excised discs of mature-green tomato pericarp tissue. Postharvest Biology and Tech.  vol. 35, no2, pp. 183-190.

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Bondada, B.R., M.A. Matthews, and K.A. Shackel. 2005. Functional xylem in the post-veraison grape berry. Journal of Experimental Botany 2005 56(421):2949-2957.

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Ping, J. Campbell, H., Jones, J. Kloepper, J. Suslow, T. and M. Wilson. 2005. Integrated biological control of bacterial speck and spot of tomato under field conditions using foliar biological control agents and plant-growth promoting rhizobacteria. Biological Control. Vol 41(2): 199-206.

Suslow, T. 2005. Making sense of rules governing chlorine contact in postharvest handling of organic produce. DANR Publication 8198.

Zhang, W., A. Lukaszewski, J. Kolmer, M. Soria, S. Goyal, J. Dubcovsky. 2005. Molecular characterization of durum and common wheat recombinant lines carrying leaf rust resistance (Lr19) and yellow pigment (Y) genes from Lophopyrum ponticum. Theoretical & Applied Genetics. 111: 573-582.

Kabir, Z., S.A. Fennimore, J.M. Duniway, F.N. Martin, G.T. Browne, C.Q. Winterbottom, H.A. Ajwa, B.B. Westerdahl, R.E. Goodhue and M.J. Haar. 2005. Alternatives to methyl bromide for strawberry runner plant production. HortScience 40(6):1709-1715.

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Levy, M., S. Rachmilevitch and S. Abel. 2005. Transient Agrobacterium-mediated gene expression in the Arabidopsis hydroponics root system for subcellular localization studies. Plant Mol. Biol. Rep. 23:179-184.

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Marty, J.T., Collinge, S.K., and Rice, K.J.. 2005. Responses of a remnant California native bunchgrass population to grazing, burning and climatic variation. Plant Ecology 181:101–112.

McKay, J.K., C. Christian, S. Harrison, and Rice, K.J.. 2005. How local is local? – Practical and conceptual issues in the genetics of restoration. Restoration Ecology 13: 432-440.

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Koller, M. and W.T. Lanini. 2005. Site Specific Herbicide Applications based on Weed Maps provide effective Control. Calif. Agric. 59(3) 182-187.

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Kyser,G.B. and J.M. DiTomaso. 2005. Beyond yellow starthistle: making sure it doesn’t come back. Proc., Calif. Weed Sci. Soc. 57:143-144.

DiTomaso, J.M., G.B. Kyser, N.K. McDougald, R.N. Vargas, M.P. Doran, R. Wilson, and S. Orloff. 2005. Medusahead control. Proc., Calif. Weed Sci. Soc. 57:145-148.

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Palou, L., J.L. Smilanick, M. Mansour, Crisosto, C.H., and T.J. Clark. 2005. Evaluation of ozone gas penetration through citrus commercial packages and control of green and blue molds sporulation during cold storage. Central Valley Postharvest Newsletter 14(1):1-4.

Palou, L., Crisosto, C.H., J.L. Smilanick, J.E. Adaskaveg, and J.P. Zoffoli. 2005. Evaluation of the effect of ozone exposure on decay development and fruit physiological behavior. Central Valley Postharvest Newsletter 14(1):5-6.

Crisosto, C.H.. 2005. Editor. Central Valley Postharvest Newsletter 14(2):1-12.

Crisosto, C.H.. 2005. Increasing ‘Blackamber’ plum consumer acceptance. Central Valley Postharvest Newsletter 14(2):3-4.

Vossen, P., A. Devarenne, and Crisosto, C.H.. 2005. Olive oil facts:  an interview with Paul Vossen. Central Valley Postharvest Newsletter 14(2):5-10.

Crisosto, C.H., Crisosto, G.M. and D.T. Garner. 2005. Understanding tree fruit consumer acceptance. Acta Horticulturae 682: 865-870 16 pp.

Peace, C.P., R. Ahmad, T.M. Gradziel A.M. Dandekar, and Crisosto, C.H.. 2005. The use of molecular genetics to improve peach and nectarine post-storage quality. Acta Horticulturae 682:403-409.

Evans, R.Y.. 2005. Science to the Grower – Postharvest Technology from Down Under. CORF News 9(1):10.

Evans, R.Y.. 2005. Irrigation Efficiency is the Key to Controlling Runoff. CORF News 9(2):1,2.

Evans, R.Y.. 2005. Science to the Grower – Plant Canopies Affect Overhead Irrigation Efficiency. CORF News 9(2):10.

Fischer, A.J., J.M. DiTomaso, and T.R. Gordon. 2005. Intraspecific groups of Claviceps purpurea associated with grass species in Willapa Bay, Washington, and the prospects for biological control of invasive Spartina alterniflora. Biological Control 34:170-179.

Fischer, A.J., T.R. Gordon, and J.M. DiTomaso. 2005. Geographic distribution and diversity in Claviceps purpurea from salt marsh habitats and characterization of Pacific Coast populations. Mycological Research. 109: 439-446.

Fischer, A.J., T.R. Gordon, and J.M. DiTomaso. 2005. Conidia morphology and ecological characteristics as diagnostic tools for Claviceps purpurea from salt marsh habitats. Canadian Journal of Plant Pathology 27:389-395.

Dvorak J., Akhunov E.D. 2005. Tempos of deletions and duplications of gene loci in relation to recombination rate during diploid and polyploid evolution in the Aegilops-Triticum alliance. Genetics 171: 323-332.

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Akhunov, E.D., Akhunova, A.R., Dvorak, J. 2005. BAC libraries of Triticum urartu, Aegilops  speltoides and Ae. tauschii, the diploid ancestors of polyploid wheat. Theor. Appl. Genet. 111: 1617-1622.

Vial, P.M., Crisosto, C.H., and Crisosto, G.M.. 2005. Early harvest delays berry skin browning of ‘Princess’ table grapes. California Agriculture 59(2):103-108.

DiTomaso, J.M. 2005. Forest Herbicide Mode of Action. Proc., Forest Vegetation Management Conference. University of California, Shasta County Cooperative Extension, Redding, California. 26.

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Uauy, C., J.C. Brevis, X. Chen, I.A. Khan, Jackson, L.F., O. Chicaiza, A. Distelfeld, T. Fahima, and J. Dubcovsky. 2005. High-temperature adult plant (HTAP) stripe rust resistance gene Yr36 from Triticum turgidum ssp. dicoccoides is closely linked to the grain protein content locus Gpc-B1. Theoretical & Applied Genetics 112: 97-105.

Vágújfalvi, A., A. Aprile, A. Miller, J. Dubcovsky, G. Delugu, G. Galiba, L. Cattivelli. 2005. The expression of several Cbf genes at the Fr-A2 locus is linked to frost resistance in wheat. Mol. Gen. Genomics 274: 506-514.

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Chicaiza O., Jackson, L.F., and J. Dubcovsky. 2005. Registration of “Clear White” wheat. Crop Science 45: 2652-2653.

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Kade, M. A. J. Barneix, S. Olmos and J. Dubcovsky. 2005. Nitrogen uptake and remobilization in tetraploid Langdon durum wheat and a recombinant substitution line with the high grain protein gene Gpc-B1. Plant Breeding 124: 343-349.

Fu D, P. Szucs, L. Yan, M. Helguera, J. S. Skinner, P. Hayes P, and J. Dubcovsky. 2005. Large deletions in the first intron of the VRN-1 vernalization gene are associated with spring growth habit in barley and polyploid wheat. Mol. Gen. Genomics. 273: 54-65.

Helguera, M., L. Vanzetti, M. Soria, I. A. Khan, J. Kolmer, J. Dubcovsky. 2005. PCR markers for Triticum speltoides leaf rust resistance gene Lr51 and their use to develop isogenic hard red spring wheat lines. Crop Science. 45: 728-734.

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Johnstone, P.R., T.K. Hartz, M.D. Cahn and M.R. Johnstone. 2005. Lettuce response to phosphorus fertilization in high phosphorus soils. HortScience 40:1499-1503.

Johnstone, P.R., T.K. Hartz, M. LeStrange, J.J. Nunez and E.M. Miyao. 2005. Managing fruit soluble solids with late-season deficit irrigation in drip-irrigated processing tomato production. HortScience 40:1857-1861.

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Hartz, T.K., P.R. Johnstone, E.M. Miyao and R.M. Davis. 2005. Mustard cover crops are ineffective in suppressing soilborne disease or improving processing tomato yield. HortScience 40:2016-2019.

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McCreary, Douglas and Melvin George. 2005. Enhancing Oak Regeneration on Grazed Rangelands. Calif. Agric. 59:217-222.

Larson, Stephanie, Kelly Smith, David Lewis, John Harper, Melvin George. 2005. Evaluation of California's Rangeland Water Quality Education Program. Rangeland Ecol. and Manage. 58:514-522.

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Vossen, P., A. Devarenne, and Crisosto, C.H.. 2005. How to handle and store your olive oil. Central Valley Postharvest Newsletter 14(2):11.

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Crisosto, C.H.. 2005. Peach market life:  Should we apply this concept?. Peach Times, Summer 2005, pp. 1, 3-4.

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Lurie, S. and Crisosto, C.H.. 2005. Chilling injury in peach and nectarine. Postharvest Biology and Technology 37:195-208.

Crisosto, C.H. and Crisosto, G.M.. 2005. Relationship between SSC and consumer acceptance for high and low acid peach (Prunus persica [Batch]) and nectarine (Prunus persica [Batch] cv. Nectarine) cultivars. Postharvest Biology and Technology.  38:239-246.

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Saltveit, M.E. 2005. Endive and Escarole. In: K.C. Gross, C.Y. Wang, M.E. Saltveit (Eds.). Agricultural Handbook 66 - The Commercial Storage of Fruits, Vegetables, and Florist and Nursery Crops. http://www.ba.ars.usda.gov/hb66/contents.html.

Saltveit, M.E. 2005. Lettuce. In: K.C. Gross, C.Y. Wang, M.E. Saltveit (Eds.). Agricultural Handbook 66 - The Commercial Storage of Fruits, Vegetables, and Florist and Nursery Crops. http://www.ba.ars.usda.gov/hb66/contents.html.

Rubatzky, V., and M.E. Saltveit. 2005. Chicory (Witloof or Belgian endive). In: K.C. Gross, C.Y. Wang, M.E. Saltveit (Eds.). Agricultural Handbook 66 - The Commercial Storage of Fruits, Vegetables, and Florist and Nursery Crops. http://www.ba.ars.usda.gov/hb66/contents.html.

Stephen M. Allen, Catherine J. Thorpe, and Diane M. Beckles. 2005. BB1423 - Homologs of Starch Synthase DUI. Inventors.

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Saltveit, M.E. 2005. Respiratory metabolism. In: K.C. Gross, C.Y. Wang, M.E. Saltveit (Eds.). Agricultural Handbook 66 - The Commercial Storage of Fruits, Vegetables, and Florist and Nursery Crops. http://www.ba.ars.usda.gov/hb66/contents.html.

Saltveit, M.E. 2005. Ethylene effects. In: K.C. Gross, C.Y. Wang, M.E. Saltveit (Eds.). Agricultural Handbook 66 - The Commercial Storage of Fruits, Vegetables, and Florist and Nursery Crops. http://www.ba.ars.usda.gov/hb66/contents.html.

Barth, M.M., Zhuang, H., Saltveit, M.E. 2005. Fresh-cut vegetables. In: K.C. Gross, C.Y. Wang, M.E. Saltveit (Eds.). Agricultural Handbook 66 - The Commercial Storage of Fruits, Vegetables, and Florist and Nursery Crops. http://www.ba.ars.usda.gov/hb66/contents.html.

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Diane M. Beckles and Richard W. Pearlstein. 2005. BB1439 - Starch Branching Enzyme IIB. Inventors.

Summers, Charles G., Mitchell, J.P., and James Stapleton. 2005. Mulches reduce aphid-borne viruses and whiteflies in cantaloupe. California Agriculture 59(2):90-94.

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Baker, J.B., R.J. Southard, and Mitchell, J.P.. 2005. Agricultural dust production and composition in standard and conservation tillage systems in the San Joaquin Valley. J. Environ. Qual. 34:1260-1269.

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Mitcham, E., M.E. Monzon, T. Simpson, V. Bikoba, W.V. Biasi, X. Feng, J. Hansen,  J. Tang, S. Wang, and J. Johnson. 2005. Radio frequency heating of walnuts and sweet cherries to control insects after harvest. Acta Horticulturae 682:2133-2139.

Mitcham, Elizabeth, Joe Grant, Bill Biasi, Elena de Castro, Tiffanie Simpson, VBeronique Bikoba, Janet Caprile, and Lynn Wnderlich. 2005. Tree fruit research in California. Washington State Horticulture Association. Proceeding of the 101st Annual Meeting, p. 167-169.

de Castro Hernandez, Elena, Bill Biasi and Elizabeth Mitcham. 2005. Quality of Pink LadyTM Apple. Washington State Horticulture Association. Proceeding of the 101st Annual Meeting, p. 152-15.

Bernal, A., Pan, Q., Pollack, J., Rose, L., Willets, N., Kozik, A., Michelmore, R. 2005. Functional dissection of the Pto resistance gene using DNA shuffling. Journal of Bioliological Chemistry 280:23073-83.

Rose, L., Langley, C., Bernal, A., Michelmore, R. 2005. Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon): I. Functional analysis of Pto alleles. Genetics 171:345-57.

Lieth, J.H., N. Mattson, and R Flannery. 2005. Development of a model for rose productivity. International Cut Flower Growers Bulletin, Feb 2005.

de Castro Hernandez, Elena, Bill Biasi, and Elizabeth Mitcham. 2005. Controlled atmosphere-induced internal browning in Pink LadyTM apples. Acta Horticulturae 687:63-69.

Holtz, Brent, Louise Ferguson, Dan Parfitt, Gerald Allen, and Ron Radoicich. 2005. Rootstock production and budding. Pistachio Production Manual, Fourth Edition, pp. 74-79.

Koike, S. & Michelmore, R. 2005. Outbreaks of severe lettuce downy mildew. Crop Notes Mar. Apr. 7-8.  Cooperative Extension, Monterey County.

Oh, Sang-Hun and Daniel Potter. 2005. Molecular phylogenetic systematics and biogeography of tribe Neillieae (Rosaceae) using DNA sequences of cpDNA, rDNA, and Leafy. American Journal of Botany 92(1):179-192.

Reumann S, Inoue K, Keegstra K. 2005. Evolution of the general protein import pathway of plastids. Molecular Membrane Biology 22:73-86.

Inoue, K., A.J. Baldwin, R.L. Shipman, K. Matsui, J.V. Perea, S. M. Theg, and M. Ohme-Takagi. 2005. Complete maturation of the plastid protein translocation channel requires a type I signal peptidase. The Journal of Cell Biology 171:425-430.

Tomilov, A.A., Tomilova, N.B., Abdallah, I. and Yoder, J.I. 2005. Localized hormone fluxes and early haustorium development in the hemiparasitic plant Triphysaria versicolor. Plant Physiology 138:1469-1480.

Canady, M. A., V. Meglic, and R. T. Chetelat. 2005. A library of Solanum lycopersicoides introgression lines in cultivated tomato. Genome 48: 685-697.

Dandekar, Abhaya, Chuck Leslie, and Gale McGranahan. 2005. Juglans regia walnut. pp 307-323 In: R.E. Litz (ed.) Biotechnology of Fruit and Nut Crops. CABI Publishing. Oxfordshire UK.

Grant, Joseph, and Gale McGranahan. 2005. English walnut rootstocks help avoid blackline disease, but produce less than ‘Paradox’ hybrid. California Agriculture:249-252.

Horn, R., A.C. Lecouls, A. Callahan, A. Dandekar, L. Garay, P. McCord, W. Howad, H. Chan, I. Verde, D. Main, S. Jung, L. Georgi, S. Forrest, J. Mook, T. Zhebentyayeva, Y. Yu, H. Ran Kim, C. Jesudurai, B. Sosinski, P. Arús, V. Baird, D. Parfitt, G. Reighard, R. Scorza, J. Tomkins, R. Wing, and A.G. Abbott. 2005. Candidate Gene Database and Transcript Map for Peach, a Model Species for Fruit Trees. Theoret. Appl. Genetics 110 (8):1419-1428.

Parfitt, D., C. Kallsen, and J. Maranto. 2005. Pistachio Cultivars. p.62-66, In: Pistachio Production Manual, 4th ed. 2005, Louise Ferguson, ed. Fruit and Nut Research and Information Center.

Snow A, Andow D, Gepts P, Hallerman E, Power A, Tiedje J, Wolfenbarger L. 2005. Ecological risks and benefits associated with the environmental release of GMO’s. Ecol. Applic. 15: 377-404. .

González-Mejía A, Wong A, Delgado-Salinas A, Papa R, Gepts P. 2005. Assessment of Inter Simple Sequence Repeat Markers to differentiate sympatric wild and domesticated populations of common bean (Phaseolus vulgaris L.). Crop Sci 45:606–615.

Gepts P. 2005. Introduction of transgenic crops in centers of origin and domestication. In: Daniel Lee Kleinman, Abby J. Kinchy, and Jo Handelsman, eds. Controversies in Science & Technology: From Maize to Menopause.  Madison, WI: The University of Wisconsin Press.

Zizumbo-Villarreal D, Payró de la Cruz E, Colunga-GarcíaMarín P, Delgado-Valerio P, Gepts P. 2005. Evolutionary dynamics in wild-weed-crop complexes of Phaseolus vulgaris L. In Mesoamerica. Crop Sci.45: 1073-1083

Andow DA, Daniell H, Gepts P, Lamkey K, Nafziger E, Strayer D. 2005. Achieving zero contamination of the food supply by pharm crops. Union of Concerned Scientists, Washington, DC. http://www.ucsusa.org/food_and_environment/biotechnology/page.cfm?pageID=1561.

Gepts P, Beavis WD, Brummer EC, Shoemaker RC, Stalker HT, Weeden NF, and Young ND. 2005. Legumes as a model plant family: genomics for food and feed. Report of the Cross-legume Advances Through Genomics (CATG) Conference. Plant Phys 137, 1228-1235.

Papa R, Acosta J, Delgado-Salinas A, Gepts P. 2005. A genome-wide analysis of differentiation between wild and domesticated Phaseolus vulgaris from Mesoamerica. Theor. Appl. Genet. 111: 1147-1158. http://dx.doi.org/10.1007/s00122-005-0045-9.

Gepts P. 2005. Gene flow from genetically engineered cultivars. In: C. de Vicente (ed.), Issues on gene flow and germplasm management International Plant Genetic Resources Institute, Rome: pp. 35-44.

Gepts P. 2005. Plant and animal domestication as human-made evolution. In: Cracraft, J. and R. Bybee (eds.), Evolutionary Science and Society: Educating a New Generation. Biological Sciences Curriculum Study, Colorado Springs, CO: pp. 180-186.

Payró de la Cruz E, Gepts P, Colunga Garcia-Marín P, Zizumbo Villareal D. 2005. Spatial distribution of genetic diversity in wild populations of Phaseolus vulgaris L. from Guanajuato and Michoacán, México. Genet Res Crop Evol .

Wang L., Y.C. Wang, T.Z. Ren, S. Geng and W.L. Ma. 2005. Applications of seaweed in aquaculture. Review of China Agricultural Science and Technology. 7(1):18-21.

Wang Y. C., T.Z. Ren, L.G. Wang, and S. Geng. 2005. A Study on biological treatment on Beijing zoo water. Equipment for Environmental Pollution Control  6(6):24-27.

Wang Y. C., T.Z. Ren, L.G. Wang, and S. Geng. 2005. Formation and treatment of Beijing water eutrophication. Journal of Chinese Agricultural Resources and Planning 26(3):40-44.

Ferguson, Louise and James E. Lessenger. 2005. Plant growth regulators. In: Agricultural Medicine, A Practical Guide. Springer, pp. 156-166.

Ferguson, Louise. 2005. Part V. Pistachio Diseases, Compendium of Nut Crop Diseases in Temperature Zones. The American Phytopathological Society, pp. 64-65.

Ding, T.-S., H.-W. Yuan, S. Geng, Y.-S. Lin, and P.-F. Lee. 2005. Energy flux, body size, density in relation to bird species richness along an elevational gradient in Taiwan. Global Ecology and Biogeography 14(4): 299-306. (SCI, IF = 3.576, top 5%).

Wang L., T.Z. Ren, Y.C. Wang and S. Geng. 2005. Extract from seaweed as a biological treatment for eutrophication. Chinese Journal of Techniques and Equipment for Environmental Pollution Control. 6(12):73-76.

Ahmad, R., L. Ferguson, and S.M. Southwick. 2005. Molecular market analyses of pistachio rootstocks by Simple Sequence Repeats and Sequence-Related Amplified Polymorphisms. Journal of Horticultural Science Biotechology. 80(3):382-386.

Ferguson, Louise. 2005. Coordinating Editor. Pistachio Production Manual, Fourth Edition. 256 pp. .

Ferguson, Louise, Blake Sanden, Steve Grattan, Lynn Epstein, and Bill Krueger. 2005. Pistachio rootstocks. In:  Pistachio Production Manual, Fourth Edition, pp. 67-84.

Holtz, Brent, Louise Ferguson, Dan Parfitt, Gerald Allen, and Ron Radoicich. 2005. Rootstock production and budding. In:  Pistachio Production Manual, Fourth Edition, pp. 74-79.

Beede, Robert H., Louise Ferguson, Chris Wylie, and Carl Fanucchi. 2005. Planting and training young trees. In:  Pistachio Production Manual, Fourth Edition, pp. 80-84.

Beede, Robert and Louise Ferguson. 2005. Pruning mature bearing trees. In:  Pistachio Production Manual, Fourth Edition, pp. 97-102.

Ferguson, Louise. 2005. Notice of plant cultivar release. Sierra Fig.  1 pg.

Zalom, Frank G., Hannah J. Burrack, Richard Price, Ray Bingham, and Louise Ferguson. 2005. Olive fruit fly (Bactrocera oleae) introduction and establishment in California. Acta Hort. (ISHS) 791:619-627.

Ferguson, Louise. 2005. UCB #1 Pistachio rootstock trials. Fruit & Nut Tree News, October 2005, pp. 8-9.

Ferguson, Louise. 2005. Editor.  California pest control districts – A “how to” manual. University of California, Cooperative Extension. June 30, 2005.

Ferguson, Louise. 2005. Editor. Olive Business Decision Making: Technical assistance to growers. Trade Adjustment Assistance for California Olives, University of California, Agriculture & Natural Resources. 153 pp.

Ferguson, Louise. 2005. Marketing alternatives. Trade Adjustment Assistance for California Olives, University of California, Agriculture & Natural Resources, pp. 69-70.

Eviner, VT and FS Chapin III. 2005. Selective gopher disturbance influences plant species effects on nitrogen cycling. Oikos. 109: 154-166.

Smith, MF, VT Eviner, KC Weathers, M Uriarte, H Ewing, J Jeschke, P Groffman, CG Jones. 2005. Creating individual awareness about responsible conduct in research. Journal of Research Administration 36:21-25.

Canals, RM, VT Eviner, DJ Herman, FS Chapin III. 2005. Plant colonizers shape early N dynamics in gopher mounds. Plant and Soil 276:327-334.

McGranahan, G.H. and C.A. Leslie. 2005. Advances in genetic improvement of walnut at the University of California, Davis. Acta Horticulturae 705:117-122.

Leslie, C.A., Hackett, W.P., D. Bujazha, and G.H. McGranahan. 2005. Adventitious rooting and clonal plant production of hybrid walnut (Juglans) rootstock selections. Acta Horticulturae 705:325-328.

Browne, G.T., W.P. Hackett, S.T. McLaughlin, C.A. Leslie and G.H. McGranahan. 2005. Evaluation of resistance to Phytophthora citricola among diverse clones of Paradox hybrid rootstocks. Acta Horticulturae 705:395-400.

Grant, J.A. and G.H. McGranahan. 2005. Orchard performance of ‘Chandler’ walnut on selected Juglans regia seedling rootstocks. Acta Hort. 705:365-370.

Staby, G.and Reid, M.S.. 2005. Improving the cold chain for cut flowers and potted plants. White paper II.  http://www.chainoflifenetwork.org/cf-inf/cfpagelets/download.cfm?pn=d&fn=2  21pp.

Staby, G., and Reid, M.S.. 2005. Mejoramiento de la cadena de frio para flores de corte y plantas de maceta. Papel blanco II.  http://www.chainoflifenetwork.org/cf-inf/cfpagelets/download.cfm?pn=d&fn=3. 21 pp.

Chen, J-C., Jiang, C-Z. & Reid, M.S.. 2005. Silencing a prohibitin alters plant development and senescence. The Plant Journal 44:16-24.

Reid, M.S. and Jiang, C.Z. 2005. New strategies in transportation for floricultural crops. Acta Horiculturae. 682:1667-1674.

Jiang, C.Z., Chen, J.C., Reid, M.S. and Clark, D.G. 2005. Functional analysis of genes associated with flower senescence. Acta Horticulturae  682:765-800.

Çelikel, F.G. and Reid, M.S.. 2005. Temperature and postharvest performance of rose (Rosa hybrida L. ´First Red´) and gypsophila (Gypsophila paniculata L. ´Bristol Fairy´) flowers. Acta Horiculturae 682:1789-1794.

Stewart, B.A, Reid, M.S., Ransom, N.A., and Slack, D.C. 2005. Impact of climate change on water supply and agriculture - Crop/Water management guidelines and extension dissemination. Science and Culture 71:288-292.

Wintermantel, W.M., Kaffka, S.R., and A.A. Cortez. 2005. The impact of age and genetics on curly top disease development in modern sugar beet varieties. In; (ANON).  Proceedings form the 33rd Biennial Meeting of the American Association of Sugar Beet Technologists.  Palm Springs, California, March 2-5, 2005, Pg 193-199.

D.H. Putnam , S. Orloff, L. R. Teuber, and J. Liu. 2005. Fall Dormancy and Cutting Schedule Effects on the Alfalfa Yield-Quality Tradeoff. Proceedings, North American Alfalfa Improvement Conference, July 29-31, 2004, Quebec City, Canada.

Putnam, D.H.,  C. Giannini, L. S. Orloff, F. Maciel, H. Carlson, D. Kirby, C. Rivera, and L. Teuber. 2005. California Alfalfa Variety Trials: Yield and Fall Dormancy Results and Roundup-Ready Yield and Quality Results. December, 2005.   Agronomy Progress Report No. 300. Cooperative Extension, Agricultural Experiment Station, Department of Plant Sciences, UC Davis. http://alfalfa.ucdavis.edu.

Putnam, D.H. J. Schmierer and M. Cheng. 2005. “California Alfalfa and Forages”. Website for the California Alfalfa & Forage Systems Workgroup including variety testing data, forage quality, pest management.   http://alfalfa.ucdavis.edu  Newly revamped Website in 2005, including new on-line maps, navigation tools, new content.

Cheng, M., D.H. Putnam and C. Giannini. 2005. “Plot Map Maker”. MS Excel Macro Program developed for UC Farm Advisors and Faculty—easy to use Excel program which makes plot maps for field research in seconds.  Available as free download.  http://alfalfa.ucdavis.edu.

S. Kaffka, J. Oster, M. Hoque, D. Corwin. 2005. Forage yield, quality and livestock production using saline drainage water in the San Joaquin Valley. Proceedings of the International Salinity Forum,  Riverside, California, March.

S. Kaffka. 2005. Nitrogen, phosphorus and salt transfers at the landscape scale in the Upper Klamath Basin of Oregon and California. Proc. Of the World Water and Env. Resources Conference, Am. Soc. Civil Eng., Anchorage, Alaska.

Shaqir, I.M., Ayars, J.E., Fulton, J.R., Hanson, J.C., Kaffka, S.R., Kopp, D.D., Ledbetter, C.A., and Nisbet, D.D. 2005. A Comprehensive Review of the Hashemite Kingdom of Jordan Center for Agricultural Research and Technology Transfer (NCARRT) and the Ministry of Agriculture. USDA-REE, Office of International Research Programs, Beltsville, Maryland.  Parts 1 and 2.

De Gryze, S., Six, J.W., C. Brits, and R. Merckx. 2005. A quantification of short-term macroaggregate dynamics:  influences of wheat residue input and texture. Soil Biology and Biochemistry 37:55-66.

Bossuyt, H., Six, J.W., and P.F. Hendrix. 2005. Protection of soil carbon by microaggregates within earthworm casts. Soil Biology & Biochemistry 37:251-258.

Zotarelli, L., B.J.R. Alves, S. Urquiaga, E. Torres, H.P. dos Santos, K. Paustian, R.M. Boddey, and Six, J.W.. 2005. Impact of tillage and crop rotation on aggregate-associated carbon in two oxisols. Soil Sci. Soc. Am. J. 69:482-491.

Pulleman, M.M., Six, J.W., A. Uyl, J.C.Y. Marinissen, and A.G. Jongmans. 2005. Earthworms and management affect organic matter incorporation and microaggregate formation in agricultural soils. Applied Soil Ecology 29:1-15.

Bruun, S., Six, J.W., L. Jensen, and K. Paustian. 2005. Estimating turnover of soil organic carbon fractions based on radiocarbon measurements. Radiocarbon 47(1):99-113.

Moran, K.K., J. Six, W.R. Horwath, and C. Van Kessel. 2005. Role of mineral-nitrogen in residue decomposition and stable soil organic matter formation. Soil Sci. Soc. Am. J. 69:1730-1736.

Kong, A.Y.Y., Six, J.W., D.C. Bryant, R.F. Denison, and C. Van Kessel. 2005. The relationship between carbon input, aggregation, and soil organic carbon stabilization in sustainable cropping systems. Soil Sci. Soc. Am. J. 69:1078-1085.

Pulleman, M.M., Six, J.W., N. van Breemen, and A.G. Jongmans. 2005. Soil organic matter distribution and microaggregate characteristics as affected by agricultural management and earthworm activity. European Journal of Soil Science 56(4):453-467.

Denef, K. and Six, J.W.. 2005. Clay mineralogy determines the importance of biological versus abiotic processes for macroaggregate formation and stabilization. European Journal of Soil Science 56(4):469-479.

Batten, K.M., Six, J.W., K.M. Scow, and M.C. Rillig. 2005. Minimal effects of plant invasion on selected physical and biological properties of serpentine grassland soils. Soil Biology & Biochemistry 37:2277-2282.

Gradziel, Thomas M. and Abhaya Dandekar. 2005. Characterizing Components of Insect-Based Resistance to Pre-harvest Aflatoxin Contamination in Almond. Aflatoxin Elimination Workshop. Sacramento, CA.  1 p.

Bondada, B.R., M.A. Matthews, and K.A. Shackel. 2005. Functional xylem in the post-veraison grape berry. Journal of Experimental Botany 56:2949-2957.

Ladha, J.K., H. Pathak, T.J. Krupnik, Six, J.W. and C. Van Kessel. 2005. Efficiency of fertilizer nitrogen in cereal production:  Retrospects and prospects. Advance in Agronomy 87:85-156.

Jan Willem van Groenigen, Pieter Jan Georgius, Chris Van Kessel, Eduard W.J., Hummelink, Gerard L. Velthof and Kor B. Zwart. 2005. Subsoil 15N-N2O concentrations in a sandy soil profile after application of 15N-fertilizer. Nutrient Cycling in Agroecosystems 72: 13-25.

Cao T, Duncan RA, McKenry MV, Shackel KA, DeJong T, and Kirkpatrick B. 2005. The Interaction between Nitrogen Fertilized Peach Trees and the Expression of syrB, a Gene Involved in Syringomycin Production in Pseudomonas syringae pv. syringae. Phytopathology 95:581-586.

Shackel KA, Celorio Mancera MDLP, Ahmadi H, Greve LC, Teuber, L.R., Backus EA, and Labavitch JM. 2005. Micro injection of Lygus Salivary Gland Proteins to Simulate Feeding Damage in Alfalfa and Cotton Flowers. Archives of Insect Biochemistry and Physiology 58:69–83.

Matthews, MA and Shackel, KA. 2005. Growth and water transport in flesh fruit. In Vascular Transport in Plants. Elsevier Academic Press, pp. 189-197.

James,J J, NN Alder, K H Mühling, AE Läuchli, KA Shackel, LA Donovan and JH Richards. 2005. High apoplastic solute concentrations in leaves alter water relations of the halophytic shrub, Sarcobatus vermiculatus. Journal of Experimental Botany 57(1):139-147.

Durzan DJ. 2005. Nitric oxide, cell death and increased taxol recovery. BMC Plant Biology Suppl.1 S12: 31 May 2005.

Durzan DJ. and Smertenko P. 2005. New approach to radiation amplification factor. BMC Plant Biology Suppl. 1, S14, 31 May 2005.

Durzan DJ., Santerre A., Havel L. 2005. Diploid parthenogenesis and early embryo development in Norway spruce suspensions. BMC Plant Biology 5: Suppl. 2, S13, 31 May 2005.

Aradhya, Mallikarjuna K., Daniel Potter, and Charles J. Simon. 2005. Cladistic biogeography of Juglans (Juglandaceae) based on chloroplast DNA intergenic spacer sequences. pp. 143-170.  In: Darwin’s Harvest, New Approaches to the Origins, Evolution, and Conservation of Crops, T. Motley, N. Zerega, and H. Cross (eds.), Columbia University Press, New York.

Reever-Morghan, K.J. and Rice, K.J.. 2005. Centaurea solstitialis invasion success is influences by Nassella pulchra size. Restoration Ecology 13: 524-528.

Davies, K.F., P. Chesson, S. Harrison, B.D. Inouye, B.A. Melbourne, and Rice, K.J.. 2005. Spatial heterogeneity explains the scale dependence of the native-exotic diversity relationship. Ecology 86: 1602-1610.

Yun, M.S., Y. Yogo, R. Miura, Y. Yamasue, and A.J. Fischer. 2005. Cytochrome P-450 monooxygenase activity in herbicide-resistant and –susceptible late watergrass (Echinochloa phyllopogon). Pestic. Biochem. Physiol. 83:107-114.

Hill, J.E., PV Du and PC Sta. Cruz. 2005. Pest profiles in an improvement of farmers’ management practices (SSNM vs FFP) of irrigated rice system of tropical Asia. Omonrice 13:34-41.

Vicente, Ariel, Civello, Marcos, Martínez, GA, Powell, Ann L.T., Labavitch, JML, Chaves Alicia. 2005. Control of postharvest spoilage in soft fruit. Stewart Postharvest Review Journal. 1: 1-11.  (http://www.stewartpostharvest.com/December_2005/Vicente.pdf).

Peace, C.P., Crisosto, C.H., and T.M. Gradziel. 2005. Endopolygalacturonase: a candidate gene for Freestone and Melting flesh in peach. Mol. Breeding 16:21-31.

Van Groenigen, J. W., K. B., Zwart, Harris, D., and C. Van Kessel. 2005. Vertical gradients of δ15N and δ18O in soil atmosphere N2O – temporal dynamics in a sandy soil. Rapid Communications in Mass Spectrometry 19 1289-1295.

Van Groenigen, K. J., A. Gorissen, Six, J.W., Harris, D., P. J. Kuikman, J. W. va Groenigen and C. Van Kessel. 2005. Decomposition of 14C-labeled roots in a pasture soil exposed to 10 years of elevated CO2. Soil Biology and Biochemistry, 37 497-506.

Van Groenigen, K.J., M.A. de Graaff, Six, J.W., Harris, D., P. Kuikman, C. Van Kessel. 2005. Soil C and N dynamics in natural and managed ecosystems under elevated atmospheric CO2. In: managed ecosystems and CO2, case studies, processes and perspectives. Eds. J Nosberger, SP Long, RJ Norby, M Stitt, GR Hendrey, H Blum.

Jasieniuk, M. 2005. Plant biotechnology: the basics. Proceedings of the California Weed Science Society 57.

Romanova, M. and J. Jernstedt. 2005. Morphogenetic events in the Ceratopteris richardii (Parkeriaceae: Pteridophyta) shoot apex. Fern Gazette 17 (4):204.

Baluška, F., P. W. Barlow, T.I. Baskin, R. Chen, L. Feldman, B.G. Forde, M., Geisler, J. Jernstedt, D. Menzel, g. K. Muday, A. Murphy, J. Šamaj, and D. Volkman. 2005. What is apical and what basal in plant root development?. Trends in Plant Science 10(9): 409-411. www.sciencedirect.com.

Kaffka, S.R., Lesch, S. M., Bali, K. and Corwin, D.L. 2005. Sugar beet yield in variable salt-affected fields and the use of geo-referenced electromagnetic induction assessment. Comp. and Electronics in Agric. 46(1-3)329-350.

Kaffka, S., Bryant, D. and Denison, F. 2005. Comparisons of organic and conventional maize and tomato cropping systems from a long-term experiment. In:  Koepke, U., Niggli, U., Neuhoff, D., Cornish, P., Lockeretz, W., and Willer, H. (eds.).  Researching Sustainable Systems.  Proc. Of the First Scientific Conference of the International Society for Organic Agriculture Research, 21-23 September 2005, Adelaide, Australia.  Research Institute of Organic Agriculture (FiBL), Frick, Switzerland.  660p, P 218-221.

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Gradziel, Thomas M. and Abhaya Dandekar. 2004. Asymmetries in fungal development on almond may indicate differential intra-tissue vulnerabilities to aflatoxin contamination. Aflatoxin Elimination Workshop.  Raleigh, NC.  1 p.

Hunter, D.A., Lange, N. and Reid, M.S.. 2004. Physiology of Flower Senescence. In [Nooden, L., Ed.] Cell Death in Plants.  Elsevier Science, USA. pp. 307-319.

Hunter, D.A., M.F. Yi, X. Xu and Reid, M.S.. 2004. Role of ethylene in perianth senescence of Daffodil (Narcissus pseudonarcissus L. ‘Dutch Master’). Postharvest Biology & Technology 32:269–280.

Neale, D. and O. Savolainen. 2004. Association genetics of complex traits in conifers. Trends in Plant Sciences 9(7):325-330.

Mitchell, J.P.. 2004. Tillage system comparisons at SAFS. Newsletter article for Sustainable Agriculture Farming Systems Project. Spring 2004. Vol. 4. No. 2-3. p.3.

Mitchell, J.P., R. Fry, R. Roy, J. Jackson, A. DuSault, J. Beyer, R. Harben and D. Munk. 2004. Conservation tillage research and extension education initiatives in California:  The Workgroup Experience. In 2004 Western States Conservation Tillage Conference Proceedings.  pp. 1 – 8.

Epstein, L., R. Beede, S. Kaur, and L. Ferguson. 2004. Rootstock effects on pistachio trees grown in Verticillium dahliae-Infested soil. Phytopathology 94(4):388-395.

Hadj-Hassan, A. and L. Ferguson. 2004. Chilling requirements of pistachio. Determination of Chill hours required for pistachio variety peters. Damascus University Journal for the Agricultural Sciences, Vol. 20 – No. 1 pg. 45-72.

Kester, D.A., K.A. Shackel, W.C. Micke, M. Viveros, and T.M. Gradziel. 2004. Noninfectious bud failure in 'Carmel' almond: I. Pattern of development in vegetative progeny trees. Journal of the American Society for Horticultural Science, vol. 129(2), 244-249.

Ferguson, Louise. 2004. Proceedings, 31st Annual Meeting, Plant Growth Regulation Society of America, August 1-4. Charleston Riverview Hotel, Charleston, South Carolina.  CD.

Ferguson, L. 2004. Update on pruning and harvesting olives mechanically. Topics in Subtropics Newsletter, University of California Cooperative Extension, April-June 2004, pp. 2-3.  Also published in:  California Olive Oil News, Volume 7, Issue 4, April 2004.

Ferguson, Louise. 2004. Persimmons:  an over-view of cultivars, production, harvesting, and marketing. 25 pp. and on-line http://fruitsandnuts@ucdavis.edu.

Doyle, James F. and Louise Ferguson. 2004. UC fig selection 6-38W, a new yellow-green skinned fruit developed for the production of dried figs. Record of Invention, Technology Transfer, 5 pp.

Sanden, B., L. Ferguson, H.C. Reyes, and S.C. Grattan. 2004. Effect of salinity on evaportranspiration and yield of San Joaquin Valley pistachios. Acta Horticulturae 664:583-589.

Lee, P.-F. L. , T.-S. Ding, and S. Geng. 2004. Breeding bird species richness in Taiwan: Distribution on gradients of elevation, primary productivity, and urbanization. Journal of Biogeography 31: 307-314. (SCI, IF = 2.804, top 10%).

Snyder, R.L., Geng, S., Orang, M.N., Matyac, J.S. and Sarreshteh, S. 2004. A simulation model for ET of applied water. Acta Horticulturae 664: 623-629.

Sylla F, Pasquet R, Gepts P. 2004. Genetic diversity of Vigna unguiculata as assessed by RAPDs. Genet Res Crop Evol 51: 539-550.

Gepts P. 2004. Crop domestication as a long-term selection experiment. Plant Breed Rev 24 (Part 2): 1-44.

Papa R, Gepts P. 2004. Asymmetric gene flow and introgression between domesticated and wild populations. In: H.C.M. den Nijs (ed.), Proc. Conf. on Genetically modified plants into wild relatives and its consequences, 21-24 January, 2003, Amsterdam.

Gepts P. 2004. Topic editor, Crop Evolution and Domestication for the Encyclopedia of Plant and Crop Science. Edited by Dr. R. Goodman and published by Dekker, http://www.dekker.com/servlet/product/productid/E-EPCS/sub?n=t.

Papa R, Gepts P. 2004. Gene flow between crops and their wild progenitors. In: Encyclopedia of Plant and Crop Science, R. Goodman, General Editor. Dekker. http://www.dekker.com/servlet/product/productid/E-EPCS/sub?n=t.

Poncet V, Robert T, Sarr A, Gepts P. 2004. Qualitative trait location analyses of the domestication syndrome and domestication process. In: Encyclopedia of Plant and Crop Science, R. Goodman, General Editor. Dekker. http://www.dekker.com/servlet/product/productid/E-EPCS/sub?n=t.

Pallottini L, Kami J, Barcaccia G, Gepts P. 2004. The genetic anatomy of a patented yellow bean. Crop Sci. 44: 968-977 .

Gepts P. 2004. Who owns biodiversity and how should the owners be compensated?. Plant Phys 134: 1295–1307.

Berthauld J, Gepts P. 2004. Chapter 3: Assessment of effects on genetic diversity. In: Maize and biodiversity: The effects of transgenic maize in Mexico. Commission on Environmental Cooperation, Montréal, Canada. http://www.cec.org/files/PDF//Maize-Biodiversity-Chapter3_en.pdf.

Seo Y.-S., Gepts P, Gilbertson RL. 2004. Genetics of resistance to the geminivirus, Bean dwarf mosaic virus, and the role of the hypersensitive response in common bean. Theor Appl Genet 108: 786-793.

Mkandawire ABC, Mabagala RB, Guzmán P, Gepts P, Gilbertson RL. 2004. Genetic diversity and pathogenic variation of common blight bacteria (Xanthomonas campestris pv. phaseoli and Xanthomonas campestris pv. phaseoli var. fuscans) suggest pathogen coevolution with the common bean. Phytopathology 94: 593-603.

McClean P, Gepts P, Kami J. 2004. Genomics and genetic diversity in common bean. In: Wilson RF, Stalker HT, Brummer EC (eds.), Legume crop genomics. AOCS Press, Champaign, IL: pp. 60-82.

De Castro, R.D., Bradford, K.J., and Hilhorst, H.W.M. 2004. Embebição e reativação do metabolismo [Germination: imbibition and activation]. In A.G. Ferreira and F. Borghetti, eds., Germinação [Germination], Artmed Editoria S.A., Porto Alegre-RS, Brasil, pp. 149-162.

Vanden Heuvel, Brian D., David R. Benson, Esteban Bortiri, and Daniel Potter. 2004. Low genetic diversity among Frankia spp. Strains nodulating sympatric populations of actinorhizal species of Rosaceae, Ceanothus (Rhamnaceae) and Datisca glomerata (Datiscaceae) west of the Sierra Nevada (California). Can. J. Microbiol. 50:989-1000.

Leslie, C.A., G.H.. McGranahan. 2004. Persian walnut breeding in California. Black Walnut in a New Century: Proceedings of the 6th Walnut Council Research Symposium. USDA FS North Central Research Station. Gen Tech Rep.NC-243 St. Paul MN: 25-30.

McGranahan, Gale. 2004. Genetic improvement of walnut varieties and rootstocks. El  Nogal y Otros Frutos de Nuez. Proceedings. Seminario Internacional. Gobierno de Chile. INIA – La Platina.

McGranahan G. 2004. Three new walnut varieties released from UC Walnut Breeding Program. Orchard Notes. July/August.

McGranahan, Gale, and Charles Leslie. 2004. Walnut tree named ‘Sexton’. Patent pending. Docket number 514112900720.

McGranahan, Gale, and Charles Leslie. 2004. Walnut tree named ‘Gillet’. Patent pending. Docket number 514112900620.

De Castro, R.D., Bradford, K.J., and Hilhorst, H.W.M. 2004. Desenvolvimento e conteúdo de água [Seed development and water content]. In A.G. Ferreira and F. Borghetti, eds., Germinação [Germination], Artmed Editoria S.A., Porto Alegre-RS, Brasil, pp. 51-67.

Defilippi, B.G., A.M. Dandekar, and A.A. Kader. 2004. Impact of suppression of ethylene action or biosynthesis on flavor metabolites in apple (Malus domestica Borkh) fruits. Journal of Agricultural and Food Chemistry 52:5694-5701.

Chattopadhyay, M.K., R. Kern, M.-Y. Mistou, A.M. Dandekar, S.L. Uratsu, and G. Richarme. 2004. The chemical chaperone praline relieves the thermosensitivity of a dnaK deletion mutant at 42°C. Journal of Bacteriology 186:8149-8152.

Rohrer, J.R., R. Ahmad, S.M. Southwick, and D. Potter. 2004. Microsatellite analysis of relationships among North Americ